Biogeography and diversity of Collodaria (Radiolaria) in the global ocean

Ocean science: The rise of Rhizaria

(2016) David A. Caron   NATURE

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

In situ imaging reveals the biomass of giant protists in the global ocean

(2016) Tristan Biard et al.   NATURE

Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans

(2015) Massimo C Pernice et al.   ISME Journal

Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing

(2015) Elianne Sirnaes Egge et al.   MOLECULAR ECOLOGY

Towards an Integrative Morpho-molecular Classification of the Collodaria (Polycystinea, Radiolaria)

(2015) Tristan Biard et al.   PROTIST

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities?

(2015) Emily A. Brown et al.   Ecology and Evolution

Open science resources for the discovery and analysis of Tara Oceans data

(2015) Stéphane Pesant et al.   Scientific Data

Brandtodiniumgen. nov. andB. nutriculacomb. Nov. (Dinophyceae), a dinoflagellate commonly found in symbiosis with polycystine radiolarians

(2014) Ian Probert et al.   JOURNAL OF PHYCOLOGY

Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing

(2014) Johan Decelle et al.   PLoS One

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Can Abundance of Protists Be Inferred from Sequence Data: A Case Study of Foraminifera

(2013) Alexandra A-T. Weber et al.   PLoS One

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Intra-Genomic Ribosomal RNA Polymorphism and Morphological Variation in Elphidium macellum Suggests Inter-Specific Hybridization in Foraminifera

(2012) Loïc Pillet et al.   PLoS One

Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

(2012) Charles K. Lee et al.   PLoS One

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

(2011) Virginia Edgcomb et al.   ISME Journal

Eukaryotic Picoplankton in Surface Oceans

(2010) Ramon Massana   Annual Review of Microbiology

Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats

(2010) Anne-Laure Sauvadet et al.   ENVIRONMENTAL MICROBIOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

A multivariate approach to large-scale variation in marine planktonic copepod diversity and its environmental correlates

(2010) Isabelle Rombouts et al.   LIMNOLOGY AND OCEANOGRAPHY

Molecular approach to determine contributions of the protist community to particle flux

(2009) Jessica Amacher et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Radiolarians decreased silicification as an evolutionary response to reduced Cenozoic ocean silica availability

(2009) D. B. Lazarus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global latitudinal variations in marine copepod diversity and environmental factors

(2009) I. Rombouts et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR

(2008) A. Godhe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY