Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

(2015) Ramon Massana et al.   ENVIRONMENTAL MICROBIOLOGY

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Open science resources for the discovery and analysis of Tara Oceans data

(2015) Stéphane Pesant et al.   Scientific Data

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Brandtodiniumgen. nov. andB. nutriculacomb. Nov. (Dinophyceae), a dinoflagellate commonly found in symbiosis with polycystine radiolarians

(2014) Ian Probert et al.   JOURNAL OF PHYCOLOGY

Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing

(2014) Johan Decelle et al.   PLoS One

Assessment of Species Diversity and Distribution of an Ancient Diatom Lineage Using a DNA Metabarcoding Approach

(2014) Deepak Nanjappa et al.   PLoS One

Cobgene pyrosequencing enables characterization of benthic dinoflagellate diversity and biogeography

(2013) Gurjeet S. Kohli et al.   ENVIRONMENTAL MICROBIOLOGY

Vampires in the oceans: predatory cercozoan amoebae in marine habitats

(2013) Cédric Berney et al.   ISME Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

(2012) Ramiro Logares et al.   ISME Journal

Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples

(2012) Sergio Balzano et al.   ISME Journal

HOW MANY SPECIES OF ALGAE ARE THERE?

(2012) Michael D. Guiry   JOURNAL OF PHYCOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Evaluating the Ribosomal Internal Transcribed Spacer (ITS) as a Candidate Dinoflagellate Barcode Marker

(2012) Rowena F. Stern et al.   PLoS One

The Taxonomic Significance of Species That Have Only Been Observed Once: The Genus Gymnodinium (Dinoflagellata) as an Example

(2012) Anne E. Thessen et al.   PLoS One

When Naked Became Armored: An Eight-Gene Phylogeny Reveals Monophyletic Origin of Theca in Dinoflagellates

(2012) Russell J. S. Orr et al.   PLoS One

Multiple microalgal partners in symbiosis with the acantharian Acanthochiasma sp. (Radiolaria)

(2012) Johan Decelle et al.   SYMBIOSIS

A quantitative review of the lifestyle, habitat and trophic diversity of dinoflagellates (Dinoflagellata, Alveolata)

(2012) Fernando Gómez   SYSTEMATICS AND BIODIVERSITY

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

The Parasitic Dinoflagellates Blastodinium spp. Inhabiting the Gut of Marine, Planktonic Copepods: Morphology, Ecology, and Unrecognized Species Diversity

(2012) Alf Skovgaard et al.   Frontiers in Microbiology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Geographical distribution of red and green Noctiluca scintillans

(2011) P. J. Harrison et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Hypervariable regions (V1–V9) of the dinoflagellate 18S rRNA using a large dataset for marker considerations

(2011) Jang-Seu Ki   JOURNAL OF APPLIED PHYCOLOGY

A Holistic Approach to Marine Eco-Systems Biology

(2011) Eric Karsenti et al.   PLOS BIOLOGY

Parallelization of the MAFFT multiple sequence alignment program

(2010) Kazutaka Katoh et al.   BIOINFORMATICS

Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing

(2010) Man Kit Cheung et al.   ISME Journal

Environmental Barcoding Reveals Massive Dinoflagellate Diversity in Marine Environments

(2010) Rowena F. Stern et al.   PLoS One

The importance and distinctiveness of small-sized phytoplankton in the Magellan Straits

(2010) Adriana Zingone et al.   POLAR BIOLOGY

Molecular Phylogeny of Noctilucoid Dinoflagellates (Noctilucales, Dinophyceae)

(2010) Fernando Gómez et al.   PROTIST

Pelagodinium gen. nov. and P. béii comb. nov., a Dinoflagellate Symbiont of Planktonic Foraminifera

(2010) Raffaele Siano et al.   PROTIST

A Time line of the Environmental Genetics of the Haptophytes

(2009) Hui Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

The NCBI BioSystems database

(2009) Lewis Y. Geer et al.   NUCLEIC ACIDS RESEARCH

Unarmoured and Thin-Walled Dinoflagellates from The Gulf of Naples, With The Description of Woloszynskia Cincta sp. nov. (Dinophyceae, Suessiales)

(2009) Raffaele Siano et al.   PHYCOLOGIA

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

High-Level Diversity of Dinoflagellates in the Natural Environment, Revealed by Assessment of Mitochondrial cox1 and cob Genes for Dinoflagellate DNA Barcoding

(2008) S. Lin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR

(2008) A. Godhe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic diversity of picoeukaryotes in a semi-enclosed harbour in the subtropical western Pacific Ocean

(2008) MK Cheung et al.   AQUATIC MICROBIAL ECOLOGY