Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

Differences in soil micro-eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs

(2016) A. Ö. C. Dupont et al.   ENVIRONMENTAL MICROBIOLOGY

Protistan community analysis: key findings of a large-scale molecular sampling

(2016) Lars Grossmann et al.   ISME Journal

Description of Lecythium terrestris sp. nov. (Chlamydophryidae, Cercozoa), a Soil Dwelling Protist Feeding on Fungi and Algae

(2016) Kenneth Dumack et al.   PROTIST

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Comparison of three clustering approaches for detecting novel environmental microbial diversity

(2016) Dominik Forster et al.   PeerJ

Estimating diversity via frequency ratios

(2015) Amy Willis et al.   BIOMETRICS

Pack hunting by minute soil testate amoebae: nematode hell is a naturalist's paradise

(2015) Edward A. D. Mitchell   ENVIRONMENTAL MICROBIOLOGY

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

(2015) Ramon Massana et al.   ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic census of active protists in soils

(2015) Stefan Geisen et al.   ISME Journal

Estimating Protistan Diversity Using High-Throughput Sequencing

(2015) Sarah K. Hu et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Local host specialization, host-switching, and dispersal shape the regional distributions of avian haemosporidian parasites

(2015) Vincenzo A. Ellis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular diversity and distribution of marine fungi across 130 European environmental samples

(2015) Thomas A. Richards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Hidden costs of infection: Chronic malaria accelerates telomere degradation and senescence in wild birds

(2015) M. Asghar et al.   SCIENCE

Swarm v2: highly-scalable and high-resolution amplicon clustering

(2015) Frédéric Mahé et al.   PeerJ

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds

(2014) Sabine Filker et al.   EXTREMOPHILES

Deep-branching Novel Lineages and High Diversity of Haptophytes in the Skagerrak (Norway) Uncovered by 454 Pyrosequencing

(2014) Elianne S. Egge et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys

(2014) Frédéric Mahé et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context

(2014) Micah Dunthorn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach

(2014) Guillaume Lentendu et al.   MOLECULAR ECOLOGY

Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

(2014) Jan Pawlowski et al.   Molecular Ecology Resources

Pathogens and insect herbivores drive rainforest plant diversity and composition

(2014) Robert Bagchi et al.   NATURE

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

The others: our biased perspective of eukaryotic genomes

(2014) Javier del Campo et al.   TRENDS IN ECOLOGY & EVOLUTION

Paleobiological Perspectives on Early Eukaryotic Evolution

(2014) A. H. Knoll   Cold Spring Harbor Perspectives in Biology

The Eukaryotic Tree of Life from a Global Phylogenomic Perspective

(2014) F. Burki   Cold Spring Harbor Perspectives in Biology

Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces

(2013) William Orsi et al.   PLoS One

Combined Amplicon Pyrosequencing Assays Reveal Presence of the Apicomplexan “type-N” (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, Australia

(2013) Jan Šlapeta et al.   PLoS One

Amplification primers of SSU rDNA for soil protists

(2013) Sina M. Adl et al.   SOIL BIOLOGY & BIOCHEMISTRY

Estimating population diversity with CatchAll

(2012) J. Bunge et al.   BIOINFORMATICS

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

Molecular Phylogeny of Pacific Archigregarines (Apicomplexa), Including Descriptions of Veloxidium leptosynaptae n. gen., n. sp., from the Sea Cucumber Leptosynapta clarki (Echinodermata), and Two New Species of Selenidium

(2012) Kevin C. Wakeman et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Phylogenetic Position of the Adeleorinid Coccidia (Myzozoa, Apicomplexa, Coccidia, Eucoccidiorida, Adeleorina) Inferred Using 18S rDNA Sequences

(2012) John R. Barta et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Contribution of cryptogamic covers to the global cycles of carbon and nitrogen

(2012) Wolfgang Elbert et al.   Nature Geoscience

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Arthropod Diversity in a Tropical Forest

(2012) Y. Basset et al.   SCIENCE

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

Aligning short reads to reference alignments and trees

(2011) Simon A. Berger et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

SSU rRNA reveals major trends in oomycete evolution

(2011) Enrique Lara et al.   FUNGAL DIVERSITY

Marine-Freshwater Colonizations of Haptophytes Inferred from Phylogeny of Environmental 18S rDNA Sequences

(2011) KAMRAN SHALCHIAN-TABRIZI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Species Boundaries in Gregarine Apicomplexan Parasites: A Case Study-Comparison of Morphometric and Molecular Variability in Lecudina cf. tuzetae (Eugregarinorida, Lecudinidae)

(2011) SONJA RUECKERT et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

Molecular systematics of marine gregarines (Apicomplexa) from North-eastern Pacific polychaetes and nemerteans, with descriptions of three novel species: Lecudina phyllochaetopteri sp. nov., Difficilina tubulani sp. nov. and Difficilina paranemertis sp. nov.

(2009) S. Rueckert et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Molecular Phylogeny and Surface Morphology of Marine Archigregarines (Apicomplexa),Selenidiumspp.,Filipodium phascolosomaen. sp., andPlatyproteumn. g. and comb. from North-Eastern Pacific Peanut Worms (Sipuncula)

(2009) SONJA RUECKERT et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Adult-Generated Hippocampal Neurons Allow the Flexible Use of Spatially Precise Learning Strategies

(2009) Alexander Garthe et al.   PLoS One

The crustacean parasites Ellobiopsis Caullery, 1910 and Thalassomyces Niezabitowski, 1913 form a monophyletic divergent clade within the Alveolata

(2009) Fernando Gómez et al.   SYSTEMATIC PARASITOLOGY