标题
Non‐specific amplification compromises environmental DNA metabarcoding with COI
作者
关键词
-
出版物
Methods in Ecology and Evolution
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2019-08-03
DOI
10.1111/2041-210x.13276
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples
- (2019) Lucas Czech et al. PLoS One
- Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater
- (2019) G. A. C. Singer et al. Scientific Reports
- Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity
- (2018) Michal Stat et al. CONSERVATION BIOLOGY
- Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples
- (2018) Iliana Bista et al. Molecular Ecology Resources
- Capture enrichment of aquatic environmental DNA: A first proof of concept
- (2018) Taylor M. Wilcox et al. Molecular Ecology Resources
- Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive
- (2018) Daniel Hering et al. WATER RESEARCH
- DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers
- (2018) Owen S. Wangensteen et al. PeerJ
- Why the COI barcode should be the community DNA metabarcode for the metazoa
- (2018) Carmelo Andújar et al. MOLECULAR ECOLOGY
- Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c oxidase I primers
- (2018) Jan-Niklas Macher et al. Molecular Ecology Resources
- New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods
- (2018) Daniel Marquina et al. Molecular Ecology Resources
- EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences
- (2018) Pierre Barbera et al. SYSTEMATIC BIOLOGY
- Impacts of DNA extraction and PCR on DNA metabarcoding estimates of soil biodiversity
- (2018) Andrew Dopheide et al. Methods in Ecology and Evolution
- Toward an ecoregion scale evaluation of eDNA metabarcoding primers: A case study for the freshwater fish biodiversity of the Murray-Darling Basin (Australia)
- (2018) Jonas Bylemans et al. Ecology and Evolution
- Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement
- (2018) Gert-Jan Jeunen et al. Molecular Ecology Resources
- Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
- (2017) Michael Stat et al. Scientific Reports
- Effect of marker choice and thermal cycling protocol on zooplankton DNA metabarcoding studies
- (2017) Laurence J. Clarke et al. Ecology and Evolution
- DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea )
- (2017) Tina E. Berry et al. Ecology and Evolution
- Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding
- (2017) Matthieu Leray et al. PeerJ
- Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary
- (2017) Mark Y. Stoeckle et al. PLoS One
- Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding
- (2017) Elizabeth A. Andruszkiewicz et al. PLoS One
- Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea
- (2017) Satoshi Yamamoto et al. Scientific Reports
- Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact
- (2017) Judith Bakker et al. Scientific Reports
- Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system
- (2016) Jennifer L.A. Shaw et al. BIOLOGICAL CONSERVATION
- From barcodes to genomes: extending the concept of DNA barcoding
- (2016) Eric Coissac et al. MOLECULAR ECOLOGY
- Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
- (2016) Bernd Hänfling et al. MOLECULAR ECOLOGY
- Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
- (2016) Alice Valentini et al. MOLECULAR ECOLOGY
- Lessons from genome skimming of arthropod-preserving ethanol
- (2016) B. Linard et al. Molecular Ecology Resources
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Censusing marine eukaryotic diversity in the twenty-first century
- (2016) Matthieu Leray et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Comparison of capture and storage methods for aqueous macrobial eDNA using an optimized extraction protocol: advantage of enclosed filter
- (2016) Johan Spens et al. Methods in Ecology and Evolution
- Sushi barcoding in the UK: another kettle of fish
- (2016) Sara G. Vandamme et al. PeerJ
- Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects
- (2016) Vasco Elbrecht et al. PeerJ
- Next-generation freshwater bioassessment: eDNA metabarcoding with a conserved metazoan primer reveals species-rich and reservoir-specific communities
- (2016) Nicholas K. M. Lim et al. Royal Society Open Science
- Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes
- (2016) Philip Francis Thomsen et al. PLoS One
- Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity
- (2015) Philip Francis Thomsen et al. BIOLOGICAL CONSERVATION
- Low mislabeling rates indicate marked improvements in European seafood market operations
- (2015) Stefano Mariani et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA
- (2015) Jesse A. Port et al. MOLECULAR ECOLOGY
- DNA metabarcoding illuminates dietary niche partitioning by African large herbivores
- (2015) Tyler R. Kartzinel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity
- (2015) Matthieu Leray et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Swarm v2: highly-scalable and high-resolution amplicon clustering
- (2015) Frédéric Mahé et al. PeerJ
- Evaluating a multigene environmental DNA approach for biodiversity assessment
- (2015) Alexei J. Drummond et al. GigaScience
- MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species
- (2015) M. Miya et al. Royal Society Open Science
- Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons
- (2015) Magdalena Guardiola et al. PLoS One
- A DNA Mini-Barcoding System for Authentication of Processed Fish Products
- (2015) Shadi Shokralla et al. Scientific Reports
- DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
- (2014) B. E. Deagle et al. Biology Letters
- Using metabarcoding to ask if easily collected soil and leaf-litter samples can be used as a general biodiversity indicator
- (2014) Chenxue Yang et al. ECOLOGICAL INDICATORS
- REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology
- (2014) Helen C. Rees et al. JOURNAL OF APPLIED ECOLOGY
- Bulk De Novo Mitogenome Assembly from Pooled Total DNA Elucidates the Phylogeny of Weevils (Coleoptera: Curculionoidea)
- (2014) Conrad P.D.T. Gillett et al. MOLECULAR BIOLOGY AND EVOLUTION
- Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias
- (2014) Laurence J. Clarke et al. Molecular Ecology Resources
- Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods
- (2014) J. Piñol et al. Molecular Ecology Resources
- Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data
- (2014) Gentile F. Ficetola et al. Molecular Ecology Resources
- Ancient and modern environmental DNA
- (2014) Mikkel Winther Pedersen et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Using Environmental DNA to Census Marine Fishes in a Large Mesocosm
- (2014) Ryan P. Kelly et al. PLoS One
- Harnessing DNA to improve environmental management
- (2014) R. P. Kelly et al. SCIENCE
- Known Knowns, Known Unknowns, Unknown Unknowns and Unknown Knowns in DNA Barcoding: A Comment on Dowton et al.
- (2014) Rupert A. Collins et al. SYSTEMATIC BIOLOGY
- Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
- (2013) Yinqiu Ji et al. ECOLOGY LETTERS
- A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
- (2013) Matthieu Leray et al. Frontiers in Zoology
- MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline
- (2013) W. Iwasaki et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- rfishbase: exploring, manipulating and visualizing FishBase data from R
- (2012) C. Boettiger et al. JOURNAL OF FISH BIOLOGY
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding
- (2012) SAMUEL D. J. BROWN et al. Molecular Ecology Resources
- MFEprimer-2.0: a fast thermodynamics-based program for checking PCR primer specificity
- (2012) Wubin Qu et al. NUCLEIC ACIDS RESEARCH
- Primer3—new capabilities and interfaces
- (2012) Andreas Untergasser et al. NUCLEIC ACIDS RESEARCH
- Sliding Window Analyses for Optimal Selection of Mini-Barcodes, and Application to 454-Pyrosequencing for Specimen Identification from Degraded DNA
- (2012) Stephane Boyer et al. PLoS One
- Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples
- (2012) Philip Francis Thomsen et al. PLoS One
- Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
- (2012) Douglas W. Yu et al. Methods in Ecology and Evolution
- Surveillance of fish species composition using environmental DNA
- (2011) Toshifumi Minamoto et al. LIMNOLOGY
- Monitoring endangered freshwater biodiversity using environmental DNA
- (2011) PHILIP FRANCIS THOMSEN et al. MOLECULAR ECOLOGY
- ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
- (2011) Tiayyba Riaz et al. NUCLEIC ACIDS RESEARCH
- DNA Barcoding of Marine Metazoa
- (2010) Ann Bucklin et al. Annual Review of Marine Science
- An In silico approach for the evaluation of DNA barcodes
- (2010) Gentile Ficetola et al. BMC GENOMICS
- A century later: Long-term change of an inshore temperate marine fish assemblage
- (2010) Matthew McHugh et al. JOURNAL OF SEA RESEARCH
- The campaign to DNA barcode all fishes, FISH-BOL
- (2009) R. D. Ward et al. JOURNAL OF FISH BIOLOGY
- DNA barcode divergence among species and genera of birds and fishes
- (2009) ROBERT D. WARD Molecular Ecology Resources
- Barcoding Bamboozled by Bacteria: Convergence to Metazoan Mitochondrial Primer Targets by Marine Microbes
- (2009) Mark E. Siddall et al. SYSTEMATIC BIOLOGY
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
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