Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c oxidase I primers
出版年份 2018 全文链接
标题
Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c
oxidase I primers
作者
关键词
-
出版物
Molecular Ecology Resources
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2018-08-22
DOI
10.1111/1755-0998.12940
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive
- (2018) Daniel Hering et al. WATER RESEARCH
- Predicting the Ecological Quality Status of Marine Environments from eDNA Metabarcoding Data Using Supervised Machine Learning
- (2017) Tristan Cordier et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Suitability of PCR primers for characterizing invertebrate communities from soil and leaf litter targeting metazoan 18S ribosomal or cytochrome oxidase I (COI) genes
- (2017) Dean J. Horton et al. EUROPEAN JOURNAL OF SOIL BIOLOGY
- Freshwater biomonitoring in the Information Age
- (2017) François Keck et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
- (2017) Kristy Deiner et al. MOLECULAR ECOLOGY
- Environmental DNA enables detection of terrestrial mammals from forest pond water
- (2017) Masayuki Ushio et al. Molecular Ecology Resources
- Taxonomy-free molecular diatom index for high-throughput eDNA biomonitoring
- (2017) Laure Apothéloz-Perret-Gentil et al. Molecular Ecology Resources
- Utility of mitochondrial-encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema
- (2017) Machiko Yamada et al. PHYCOLOGICAL RESEARCH
- DNA metabarcoding of unfractionated water samples relates phyto-, zoo- and bacterioplankton dynamics and reveals a single-taxon bacterial bloom
- (2017) Christian Wurzbacher et al. Environmental Microbiology Reports
- Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity
- (2017) Iliana Bista et al. Nature Communications
- Sorting things out: Assessing effects of unequal specimen biomass on DNA metabarcoding
- (2017) Vasco Elbrecht et al. Ecology and Evolution
- Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities
- (2017) Olivier Laroche et al. PeerJ
- Detection of a global aquatic invasive amphibian, Xenopus laevis, using environmental DNA
- (2016) Jean Secondi et al. AMPHIBIA-REPTILIA
- Scale and scope matter when explaining varying patterns of community diversity in riverine metacommunities
- (2016) Mathew Seymour et al. BASIC AND APPLIED ECOLOGY
- Distribution and population genetic variation of cryptic species of the Alpine mayfly Baetis alpinus (Ephemeroptera: Baetidae) in the Central Alps
- (2016) Marie Leys et al. BMC EVOLUTIONARY BIOLOGY
- Widely distributed and regionally isolated! Drivers of genetic structure in Gammarus fossarum in a human-impacted landscape
- (2016) Martina Weiss et al. BMC EVOLUTIONARY BIOLOGY
- Metabarcoding reveals strong spatial structure and temporal turnover of zooplankton communities among marine and freshwater ports
- (2016) Frédéric J. J. Chain et al. DIVERSITY AND DISTRIBUTIONS
- Multiple-stressor effects on stream invertebrates: DNA barcoding reveals contrasting responses of cryptic mayfly species
- (2016) Jan N. Macher et al. ECOLOGICAL INDICATORS
- Protist metabarcoding and environmental biomonitoring: Time for change
- (2016) J. Pawlowski et al. EUROPEAN JOURNAL OF PROTISTOLOGY
- Detecting signatures of competition from observational data: a combined approach using DNA barcoding, diversity partitioning and checkerboards at small spatial scales
- (2016) Trevor T. Bringloe et al. FRESHWATER BIOLOGY
- Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
- (2016) Bernd Hänfling et al. MOLECULAR ECOLOGY
- Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
- (2016) Alice Valentini et al. MOLECULAR ECOLOGY
- Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA
- (2016) Lucie Zinger et al. SOIL BIOLOGY & BIOCHEMISTRY
- Environmental DNA reveals that rivers are conveyer belts of biodiversity information
- (2016) Kristy Deiner et al. Nature Communications
- Environmental context and magnitude of disturbance influence trait-mediated community responses to wastewater in streams
- (2016) Francis J. Burdon et al. Ecology and Evolution
- Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects
- (2016) Vasco Elbrecht et al. PeerJ
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- The ecology of environmental DNA and implications for conservation genetics
- (2015) Matthew A. Barnes et al. CONSERVATION GENETICS
- www.freshwaterecology.info – An online tool that unifies, standardises and codifies more than 20,000 European freshwater organisms and their ecological preferences
- (2015) Astrid Schmidt-Kloiber et al. ECOLOGICAL INDICATORS
- Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates
- (2015) Eddy J. Dowle et al. Molecular Ecology Resources
- Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies
- (2015) Ida Baerholm Schnell et al. Molecular Ecology Resources
- Planetary boundaries: Guiding human development on a changing planet
- (2015) W. Steffen et al. SCIENCE
- Managing aquatic ecosystems and water resources under multiple stress — An introduction to the MARS project
- (2015) Daniel Hering et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
- (2015) Vasco Elbrecht et al. PLoS One
- Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing
- (2015) Joel F. Gibson et al. PLoS One
- DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
- (2014) B. E. Deagle et al. Biology Letters
- Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies
- (2014) Jonas Zimmermann et al. Molecular Ecology Resources
- Cryptic biodiversity in streams: a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications
- (2014) John K. Jackson et al. Freshwater Science
- Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
- (2013) Yinqiu Ji et al. ECOLOGY LETTERS
- Patterns of benthic algae and cyanobacteria along twin-stressor gradients of nutrients and fine sediment: a stream mesocosm experiment
- (2013) Annika Wagenhoff et al. FRESHWATER BIOLOGY
- A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
- (2013) Matthieu Leray et al. Frontiers in Zoology
- Effects of connectivity, dispersal directionality and functional traits on the metacommunity structure of river benthic diatoms
- (2013) Jing Liu et al. JOURNAL OF BIOGEOGRAPHY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Macroinvertebrate responses along broad stressor gradients of deposited fine sediment and dissolved nutrients: a stream mesocosm experiment
- (2012) Annika Wagenhoff et al. JOURNAL OF APPLIED ECOLOGY
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Sequencing our way towards understanding global eukaryotic biodiversity
- (2012) Holly M. Bik et al. TRENDS IN ECOLOGY & EVOLUTION
- CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
- (2012) Jan Pawlowski et al. PLOS BIOLOGY
- Subsidy-stress and multiple-stressor effects along gradients of deposited fine sediment and dissolved nutrients in a regional set of streams and rivers
- (2011) ANNIKA WAGENHOFF et al. FRESHWATER BIOLOGY
- DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer
- (2011) GREGG P. ROBIDEAU et al. Molecular Ecology Resources
- THE IMPACT OF FINE SEDIMENT ON MACRO-INVERTEBRATES
- (2011) J. I. Jones et al. RIVER RESEARCH AND APPLICATIONS
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Multiple stressors in agricultural streams: interactions among sediment addition, nutrient enrichment and water abstraction
- (2010) Christoph D. Matthaei et al. JOURNAL OF APPLIED ECOLOGY
- Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises
- (2010) S. CREER et al. MOLECULAR ECOLOGY
- Global threats to human water security and river biodiversity
- (2010) C. J. Vörösmarty et al. NATURE
- Do insects lose flight before they lose their wings? Population genetic structure in subalpine stoneflies
- (2009) GRAHAM A. McCULLOCH et al. MOLECULAR ECOLOGY
- Barcoding Amoebae: Comparison of SSU, ITS and COI Genes as Tools for Molecular Identification of Naked Lobose Amoebae
- (2009) Elena Nassonova et al. PROTIST
- Barcoding Bamboozled by Bacteria: Convergence to Metazoan Mitochondrial Primer Targets by Marine Microbes
- (2009) Mark E. Siddall et al. SYSTEMATIC BIOLOGY
- Individual and combined responses of stream ecosystems to multiple stressors
- (2008) Colin R. Townsend et al. JOURNAL OF APPLIED ECOLOGY
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started