标题
Why the COI barcode should be the community DNA metabarcode for the metazoa
作者
关键词
-
出版物
MOLECULAR ECOLOGY
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2018-08-22
DOI
10.1111/mec.14844
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples
- (2018) Iliana Bista et al. Molecular Ecology Resources
- Instances of erroneous DNA barcoding of metazoan invertebrates: Are universal cox1 gene primers too “universal”?
- (2018) Monika Mioduchowska et al. PLoS One
- Estimating intraspecific genetic diversity from community DNA metabarcoding data
- (2018) Vasco Elbrecht et al. PeerJ
- The use of nemabiome metabarcoding to explore gastro-intestinal nematode species diversity and anthelmintic treatment effectiveness in beef calves
- (2017) Russell W. Avramenko et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
- (2017) Benjamin J Callahan et al. ISME Journal
- Metabarcoding of freshwater invertebrates to detect the effects of a pesticide spill
- (2017) Carmelo Andújar et al. MOLECULAR ECOLOGY
- Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
- (2017) Kristy Deiner et al. MOLECULAR ECOLOGY
- Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding
- (2017) Henrik Krehenwinkel et al. Scientific Reports
- Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
- (2017) Michael Stat et al. Scientific Reports
- Connecting Earth observation to high-throughput biodiversity data
- (2017) Alex Bush et al. Nature Ecology & Evolution
- A new primer set for DNA metabarcoding of soil Metazoa
- (2016) E. Capra et al. EUROPEAN JOURNAL OF SOIL BIOLOGY
- A quantitative protocol for DNA metabarcoding of springtails (Collembola)
- (2016) Seikoh Saitoh et al. GENOME
- Calibrating the taxonomy of a megadiverse insect family: 3000 DNA barcodes from geometrid type specimens (Lepidoptera, Geometridae)
- (2016) Axel Hausmann et al. GENOME
- A combined field survey and molecular identification protocol for comparing forest arthropod biodiversity across spatial scales
- (2016) Brent C. Emerson et al. Molecular Ecology Resources
- Metabarcoding and mitochondrial metagenomics of endogean arthropods to unveil the mesofauna of the soil
- (2016) Paula Arribas et al. Methods in Ecology and Evolution
- BarcodingR: an integrated r package for species identification using DNA barcodes
- (2016) Ai-bing Zhang et al. Methods in Ecology and Evolution
- Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects
- (2016) Vasco Elbrecht et al. PeerJ
- The utility of DNA metabarcoding for studying the response of arthropod diversity and composition to land-use change in the tropics
- (2016) Kingsly Chuo Beng et al. Scientific Reports
- SPINGO: a rapid species-classifier for microbial amplicon sequences
- (2015) Guy Allard et al. BMC BIOINFORMATICS
- DNA metabarcoding of insects and allies: an evaluation of primers and pipelines
- (2015) G.-J. Brandon-Mong et al. BULLETIN OF ENTOMOLOGICAL RESEARCH
- Performance of cytochrome c oxidase subunit I (COI), ribosomal DNA Large Subunit (LSU) and Internal Transcribed Spacer 2 (ITS2) in DNA barcoding of Collembola
- (2015) Sten Anslan et al. EUROPEAN JOURNAL OF SOIL BIOLOGY
- Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material
- (2015) Austen C. Thomas et al. Molecular Ecology Resources
- Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
- (2015) Melanie Schirmer et al. NUCLEIC ACIDS RESEARCH
- Evaluating a multigene environmental DNA approach for biodiversity assessment
- (2015) Alexei J. Drummond et al. GigaScience
- DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
- (2014) B. E. Deagle et al. Biology Letters
- Using metabarcoding to ask if easily collected soil and leaf-litter samples can be used as a general biodiversity indicator
- (2014) Chenxue Yang et al. ECOLOGICAL INDICATORS
- Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias
- (2014) Laurence J. Clarke et al. Molecular Ecology Resources
- Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods
- (2014) J. Piñol et al. Molecular Ecology Resources
- DNA barcoding gap: reliable species identification over morphological and geographical scales
- (2014) Klemen Čandek et al. Molecular Ecology Resources
- A metagenetic approach for revealing community structure of marine planktonic copepods
- (2014) J. Hirai et al. Molecular Ecology Resources
- An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
- (2014) Douglas W Fadrosh et al. Microbiome
- A general species delimitation method with applications to phylogenetic placements
- (2013) Jiajie Zhang et al. BIOINFORMATICS
- Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
- (2013) Yinqiu Ji et al. ECOLOGY LETTERS
- A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
- (2013) Matthieu Leray et al. Frontiers in Zoology
- GenBank
- (2013) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
- PyroClean: Denoising Pyrosequences from Protein-Coding Amplicons for the Recovery of Interspecific and Intraspecific Genetic Variation
- (2013) Ricardo Ramirez-Gonzalez et al. PLoS One
- Whole-community DNA barcoding reveals a spatio-temporal continuum of biodiversity at species and genetic levels
- (2013) Andrés Baselga et al. Nature Communications
- On the comparison of population-level estimates of haplotype and nucleotide diversity: a case study using the gene cox1 in animals
- (2012) W P Goodall-Copestake et al. HEREDITY
- Environmental DNA
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- PCR Primers for Metazoan Mitochondrial 12S Ribosomal DNA Sequences
- (2012) Ryuji J. Machida et al. PLoS One
- The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna
- (2012) C. Q. Tang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
- (2012) Douglas W. Yu et al. Methods in Ecology and Evolution
- ABGD, Automatic Barcode Gap Discovery for primary species delimitation
- (2011) N. PUILLANDRE et al. MOLECULAR ECOLOGY
- MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
- (2011) Vincent Ranwez et al. PLoS One
- DNA Barcoding of Marine Metazoa
- (2010) Ann Bucklin et al. Annual Review of Marine Science
- Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises
- (2010) S. CREER et al. MOLECULAR ECOLOGY
- Second-generation environmental sequencing unmasks marine metazoan biodiversity
- (2010) Vera G. Fonseca et al. Nature Communications
- 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
- (2009) M. Buée et al. NEW PHYTOLOGIST
- Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
- (2008) Micah Hamady et al. NATURE METHODS
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