Sliding Window Analyses for Optimal Selection of Mini-Barcodes, and Application to 454-Pyrosequencing for Specimen Identification from Degraded DNA
出版年份 2012 全文链接
标题
Sliding Window Analyses for Optimal Selection of Mini-Barcodes, and Application to 454-Pyrosequencing for Specimen Identification from Degraded DNA
作者
关键词
-
出版物
PLoS One
Volume 7, Issue 5, Pages e38215
出版商
Public Library of Science (PLoS)
发表日期
2012-05-30
DOI
10.1371/journal.pone.0038215
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Using molecular tools to identify New Zealand endemic earthworms in a mine restoration project
- (2013) Stephane Boyer et al. ZOOLOGY IN THE MIDDLE EAST
- Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding
- (2012) SAMUEL D. J. BROWN et al. Molecular Ecology Resources
- Proportion of prey consumed can be determined from faecal DNA using real-time PCR
- (2011) ELLA BOWLES et al. Molecular Ecology Resources
- Molecular and morphological analyses of faeces to investigate the diet of earthworm predators: Example of a carnivorous land snail endemic to New Zealand
- (2011) Stephane Boyer et al. PEDOBIOLOGIA
- Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
- (2011) Mehrdad Hajibabaei et al. PLoS One
- Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing
- (2011) Kristine Bohmann et al. PLoS One
- Pyrosequencing for Mini-Barcoding of Fresh and Old Museum Specimens
- (2011) Shadi Shokralla et al. PLoS One
- Comparing four mitochondrial genes in earthworms – Implications for identification, phylogenetics, and discovery of cryptic species
- (2011) Jasmin Klarica et al. SOIL BIOLOGY & BIOCHEMISTRY
- Qualitative assessment of the diet of European eel larvae in the Sargasso Sea resolved by DNA barcoding
- (2010) L. Riemann et al. Biology Letters
- Comparative performances of DNA barcoding across insect orders
- (2010) Massimiliano Virgilio et al. BMC BIOINFORMATICS
- An In silico approach for the evaluation of DNA barcodes
- (2010) Gentile Ficetola et al. BMC GENOMICS
- ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
- (2010) Eva Bellemain et al. BMC MICROBIOLOGY
- Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out?
- (2010) Bruce E. Deagle et al. CONSERVATION GENETICS
- Short rDNA Barcodes for Species Identification in Foraminifera
- (2010) JAN PAWLOWSKI et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
- Powelliphanta augusta, a new species of land snail, with a description of its former habitat, Stockton coal plateau, New Zealand
- (2010) Kath J. Walker et al. JOURNAL OF THE ROYAL SOCIETY OF NEW ZEALAND
- Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises
- (2010) S. CREER et al. MOLECULAR ECOLOGY
- Multiplex reactions for the molecular detection of predation on pest and nonpest invertebrates in agroecosystems
- (2010) R. ANDREW KING et al. Molecular Ecology Resources
- Assessing the effects of primer specificity on eliminating numt coamplification in DNA barcoding: a case study from Orthoptera (Arthropoda: Insecta)
- (2010) MATTHEW J. MOULTON et al. Molecular Ecology Resources
- Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces
- (2010) MATT R. K. ZEALE et al. Molecular Ecology Resources
- Phylogenetic analysis of New Zealand earthworms (Oligochaeta: Megascolecidae) reveals ancient clades and cryptic taxonomic diversity
- (2010) Thomas R. Buckley et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- DNA mini-barcodes in taxonomic assignment: a morphologically unique new homoneurous moth clade from the Indian Himalayas described in Micropterix (Lepidoptera, Micropterigidae)
- (2010) David C. Lees et al. ZOOLOGICA SCRIPTA
- The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies
- (2010) Patrick D. Schloss PLoS Computational Biology
- Species on the menu of a generalist predator, the eastern red bat (Lasiurus borealis): using a molecular approach to detect arthropod prey
- (2009) ELIZABETH L. CLARE et al. MOLECULAR ECOLOGY
- A high densityCOX1barcode oligonucleotide array for identification and detection of species ofPenicilliumsubgenusPenicillium
- (2009) W. CHEN et al. Molecular Ecology Resources
- Progress towards DNA barcoding of fungi
- (2009) KEITH A. SEIFERT Molecular Ecology Resources
- Recovering full DNA barcodes from natural history collections of Tephritid fruitflies (Tephritidae, Diptera) using mini barcodes
- (2009) J. K. J. VAN HOUDT et al. Molecular Ecology Resources
- A DNA barcode for land plants
- (2009) et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A universal DNA mini-barcode for biodiversity analysis
- (2008) Isabelle Meusnier et al. BMC GENOMICS
- Recent developments in the MAFFT multiple sequence alignment program
- (2008) K. Katoh et al. BRIEFINGS IN BIOINFORMATICS
- Pseudogenes and DNA-based diet analyses: a cautionary tale from a relatively well sampled predator-prey system
- (2008) G. Dunshea et al. BULLETIN OF ENTOMOLOGICAL RESEARCH
- INVITED REVIEW: Molecular analysis of predation: a review of best practice for DNA-based approaches
- (2008) R. A. KING et al. MOLECULAR ECOLOGY
- UniPrime: a workflow-based platform for improved universal primer design
- (2008) Michaël Bekaert et al. NUCLEIC ACIDS RESEARCH
- Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified
- (2008) H. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA barcoding for ecologists
- (2008) Alice Valentini et al. TRENDS IN ECOLOGY & EVOLUTION
- Gut content identification of larvae of the Anopheles gambiae complex in western Kenya using a barcoding approach
- (2007) C. GARROS et al. Molecular Ecology Resources
- DNA BARCODING: Barcoding corals: limited by interspecific divergence, not intraspecific variation
- (2007) T. L. SHEARER et al. Molecular Ecology Resources
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More