Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
出版年份 2012 全文链接
标题
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
作者
关键词
-
出版物
Methods in Ecology and Evolution
Volume 3, Issue 4, Pages 613-623
出版商
Wiley
发表日期
2012-05-03
DOI
10.1111/j.2041-210x.2012.00198.x
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Sequencing our way towards understanding global eukaryotic biodiversity
- (2012) Holly M. Bik et al. TRENDS IN ECOLOGY & EVOLUTION
- Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering
- (2011) Xiaolin Hao et al. BIOINFORMATICS
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- DNACLUST: accurate and efficient clustering of phylogenetic marker genes
- (2011) Mohammadreza Ghodsi et al. BMC BIOINFORMATICS
- Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities
- (2011) B. C. Emerson et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
- (2011) Mehrdad Hajibabaei et al. PLoS One
- Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders
- (2011) Caren S. Goldberg et al. PLoS One
- MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
- (2011) Vincent Ranwez et al. PLoS One
- Implications of Goodhart's Law for monitoring global biodiversity loss
- (2011) Adrian C. Newton Conservation Letters
- “Sight-unseen” detection of rare aquatic species using environmental DNA
- (2011) Christopher L. Jerde et al. Conservation Letters
- PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data
- (2011) Thomas J. Sharpton et al. PLoS Computational Biology
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Arthropods as surrogates of diversity at different spatial scales
- (2010) Clara Gaspar et al. BIOLOGICAL CONSERVATION
- The Effectiveness of Surrogate Taxa for the Representation of Biodiversity
- (2010) ADAM S. LEWANDOWSKI et al. CONSERVATION BIOLOGY
- The potential of parasitoid Hymenoptera as bioindicators of arthropod diversity in agricultural grasslands
- (2010) Annette Anderson et al. JOURNAL OF APPLIED ECOLOGY
- Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises
- (2010) S. CREER et al. MOLECULAR ECOLOGY
- Ecometagenetics confirm high tropical rainforest nematode diversity
- (2010) DOROTA L. PORAZINSKA et al. MOLECULAR ECOLOGY
- Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity
- (2010) VIOLA NOLTE et al. MOLECULAR ECOLOGY
- Second-generation sequencing derived insights into the temporal biodiversity dynamics of freshwater protists
- (2010) SIMON CREER MOLECULAR ECOLOGY
- Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
- (2010) RALPH MEDINGER et al. MOLECULAR ECOLOGY
- Quantifying microbial communities with 454 pyrosequencing: does read abundance count?
- (2010) ANTHONY S. AMEND et al. MOLECULAR ECOLOGY
- Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
- (2010) Jens Reeder et al. NATURE METHODS
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals
- (2010) Hui Yao et al. PLoS One
- Second-generation environmental sequencing unmasks marine metazoan biodiversity
- (2010) Vera G. Fonseca et al. Nature Communications
- PyNAST: a flexible tool for aligning sequences to a template alignment
- (2009) J. G. Caporaso et al. BIOINFORMATICS
- Windshield splatter analysis with the Galaxy metagenomic pipeline
- (2009) S. Kosakovsky Pond et al. GENOME RESEARCH
- Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
- (2009) Micah Hamady et al. ISME Journal
- Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure
- (2009) DOROTA L. PORAZINSKA et al. Molecular Ecology Resources
- Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity
- (2009) DOROTA L. PORAZINSKA et al. Molecular Ecology Resources
- Accurate determination of microbial diversity from 454 pyrosequencing data
- (2009) Christopher Quince et al. NATURE METHODS
- iCODEHOP: a new interactive program for designing COnsensus-DEgenerate Hybrid Oligonucleotide Primers from multiply aligned protein sequences
- (2009) R. Boyce et al. NUCLEIC ACIDS RESEARCH
- A DNA barcode for land plants
- (2009) et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Species detection using environmental DNA from water samples
- (2008) G. F. Ficetola et al. Biology Letters
- A universal DNA mini-barcode for biodiversity analysis
- (2008) Isabelle Meusnier et al. BMC GENOMICS
- Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci — Implications for evolutionary analysis
- (2008) Tobias L. Lenz et al. GENE
- Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics
- (2008) Kasper Munch et al. SYSTEMATIC BIOLOGY
- DNA barcoding in surveys of small mammal communities: a field study in Suriname
- (2007) ALEX V. BORISENKO et al. Molecular Ecology Resources
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now