Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

Physical disturbance enhances ecological networks for heathland biota: A multiple taxa experiment

(2013) Scott M. Pedley et al.   BIOLOGICAL CONSERVATION

Achieving Conservation Science that Bridges the Knowledge-Action Boundary

(2013) CARLY N. COOK et al.   CONSERVATION BIOLOGY

Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils

(2013) Darren S. Baldwin et al.   MOLECULAR ECOLOGY

Carrion fly-derived DNA as a tool for comprehensive and cost-effective assessment of mammalian biodiversity

(2013) Sébastien Calvignac-Spencer et al.   MOLECULAR ECOLOGY

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

(2013) L. Kermarrec et al.   Molecular Ecology Resources

Using Environmental DNA to Estimate the Distribution of an Invasive Fish Species in Ponds

(2013) Teruhiko Takahara et al.   PLoS One

Essential Biodiversity Variables

(2013) H. M. Pereira et al.   SCIENCE

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

(2013) Aibin Zhan et al.   Methods in Ecology and Evolution

Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

(2013) Xin Zhou et al.   GigaScience

Screening mammal biodiversity using DNA from leeches

(2012) Ida Bærholm Schnell et al.   CURRENT BIOLOGY

The biodiversity audit approach challenges regional priorities and identifies a mismatch in conservation

(2012) Paul M. Dolman et al.   JOURNAL OF APPLIED ECOLOGY

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

(2012) DONALD J. BAIRD et al.   MOLECULAR ECOLOGY

DNA from soil mirrors plant taxonomic and growth form diversity

(2012) N. G. YOCCOZ et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Detection of airborne genetically modified maize pollen by real-time PCR

(2012) SILVIA FOLLONI et al.   Molecular Ecology Resources

Making Robust Policy Decisions Using Global Biodiversity Indicators

(2012) Emily Nicholson et al.   PLoS One

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

Sequencing our way towards understanding global eukaryotic biodiversity

(2012) Holly M. Bik et al.   TRENDS IN ECOLOGY & EVOLUTION

The dilemma of green business in tropical forests: how to protect what it cannot identify

(2012) Erik Meijaard et al.   Conservation Letters

The effectiveness and evaluation of conservation planning

(2012) Madeleine C. Bottrill et al.   Conservation Letters

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol

(2012) Mehrdad Hajibabaei et al.   BMC ECOLOGY

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering

(2011) Xiaolin Hao et al.   BIOINFORMATICS

A framework for integrating biodiversity concerns into national REDD+ programmes

(2011) Toby A. Gardner et al.   BIOLOGICAL CONSERVATION

DNACLUST: accurate and efficient clustering of phylogenetic marker genes

(2011) Mohammadreza Ghodsi et al.   BMC BIOINFORMATICS

The Future of Payments for Environmental Services

(2011) PAUL J. FERRARO   CONSERVATION BIOLOGY

Should payments for biodiversity conservation be based on action or results?

(2011) James M. Gibbons et al.   JOURNAL OF APPLIED ECOLOGY

Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing

(2011) INGA HIIESALU et al.   MOLECULAR ECOLOGY

Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity

(2011) KENNETH ANDERSEN et al.   MOLECULAR ECOLOGY

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

A fuzzy-set-theory-based approach to analyse species membership in DNA barcoding

(2011) A.-B. ZHANG et al.   MOLECULAR ECOLOGY

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders

(2011) Caren S. Goldberg et al.   PLoS One

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

(2011) Vincent Ranwez et al.   PLoS One

Paying for Ecosystem Services--Promise and Peril

(2011) A. P. Kinzig et al.   SCIENCE

Does conservation on farmland contribute to halting the biodiversity decline?

(2011) David Kleijn et al.   TRENDS IN ECOLOGY & EVOLUTION

Implications of Goodhart's Law for monitoring global biodiversity loss

(2011) Adrian C. Newton   Conservation Letters

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

Cost-effective conservation: calculating biodiversity and logging trade-offs in Southeast Asia

(2011) Brendan Fisher et al.   Conservation Letters

Distance-based multivariate analyses confound location and dispersion effects

(2011) David I. Warton et al.   Methods in Ecology and Evolution

High-throughput DNA sequencing - concepts and limitations

(2010) Martin Kircher et al.   BIOESSAYS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Use of Abundance of One Species as a Surrogate for Abundance of Others

(2010) SAMUEL A. CUSHMAN et al.   CONSERVATION BIOLOGY

Allocating monitoring effort in the face of unknown unknowns

(2010) Brendan A. Wintle et al.   ECOLOGY LETTERS

Direct Measurement Versus Surrogate Indicator Species for Evaluating Environmental Change and Biodiversity Loss

(2010) David B. Lindenmayer et al.   ECOSYSTEMS

Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA

(2010) Anthony A Chariton et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Ecometagenetics confirm high tropical rainforest nematode diversity

(2010) DOROTA L. PORAZINSKA et al.   MOLECULAR ECOLOGY

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity

(2010) VIOLA NOLTE et al.   MOLECULAR ECOLOGY

Molecular analysis of parasitoid linkages (MAPL): gut contents of adult parasitoid wasps reveal larval host

(2010) RODOLPHE ROUGERIE et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

High-resolution forest carbon stocks and emissions in the Amazon

(2010) G. P. Asner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Degraded lands worth protecting: the biological importance of Southeast Asia's repeatedly logged forests

(2010) D. P. Edwards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Barometer of Life: More Action, Not More Data

(2010) A. T. Knight et al.   SCIENCE

The Barometer of Life

(2010) S. N. Stuart et al.   SCIENCE

The biodiversity bank cannot be a lending bank

(2010) Sarah A. Bekessy et al.   Conservation Letters

Second-generation environmental sequencing unmasks marine metazoan biodiversity

(2010) Vera G. Fonseca et al.   Nature Communications

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Optimal design of pro-conservation incentives

(2009) Astrid Zabel et al.   ECOLOGICAL ECONOMICS

Modelling the long-term sustainability of indigenous hunting in Manu National Park, Peru: landscape-scale management implications for Amazonia

(2009) Taal Levi et al.   JOURNAL OF APPLIED ECOLOGY

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

Selecting and conserving lands for biodiversity: The role of remote sensing

(2009) John Wiens et al.   REMOTE SENSING OF ENVIRONMENT

Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci — Implications for evolutionary analysis

(2008) Tobias L. Lenz et al.   GENE

Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics

(2008) Kasper Munch et al.   SYSTEMATIC BIOLOGY

Asymmetric information and contract design for payments for environmental services

(2007) Paul J. Ferraro   ECOLOGICAL ECONOMICS