Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets
出版年份 2018 全文链接
标题
Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets
作者
关键词
-
出版物
BMC EVOLUTIONARY BIOLOGY
Volume 18, Issue 1, Pages -
出版商
Springer Nature America, Inc
发表日期
2018-11-15
DOI
10.1186/s12862-018-1290-2
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- De novo assembly of the kidney and spleen transcriptomes of the cosmopolitan blue shark, Prionace glauca
- (2018) André M. Machado et al. Marine Genomics
- Haptoglobin Is a Divergent MASP Family Member That Neofunctionalized To Recycle Hemoglobin via CD163 in Mammals
- (2018) Anthony K. Redmond et al. JOURNAL OF IMMUNOLOGY
- Outgroup, alignment and modelling improvements indicate that two TNFSF13-like genes existed in the vertebrate ancestor
- (2017) Anthony K . Redmond et al. IMMUNOGENETICS
- Phylotranscriptomic consolidation of the jawed vertebrate timetree
- (2017) Iker Irisarri et al. Nature Ecology & Evolution
- Multi-tissue RNA-seq and transcriptome characterisation of the spiny dogfish shark (Squalus acanthias) provides a molecular tool for biological research and reveals new genes involved in osmoregulation
- (2017) Andres Chana-Munoz et al. PLoS One
- Evidence of positive selection associated with placental loss in tiger sharks
- (2016) Dominic G. Swift et al. BMC EVOLUTIONARY BIOLOGY
- The complement system of elasmobranches revealed by liver transcriptome analysis of a hammerhead shark, Sphyrna zygaena
- (2016) Masayuki Goshima et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Adaptive phenotypic response to climate enabled by epigenetics in a K-strategy species, the fishLeucoraja ocellata(Rajidae)
- (2016) Jackie Lighten et al. Royal Society Open Science
- Venom gland transcriptome analyses of two freshwater stingrays (Myliobatiformes: Potamotrygonidae) from Brazil
- (2016) Nelson Gomes de Oliveira Júnior et al. Scientific Reports
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica
- (2015) Selene L Fernandez-Valverde et al. BMC GENOMICS
- Type 1 regulatory T cells: a new mechanism of peripheral immune tolerance
- (2015) Hanyu Zeng et al. Cellular & Molecular Immunology
- Characterisation of the TNF superfamily members CD40L and BAFF in the small-spotted catshark ( Scyliorhinus canicula )
- (2015) Ronggai Li et al. FISH & SHELLFISH IMMUNOLOGY
- The CXC chemokine receptors of fish: Insights into CXCR evolution in the vertebrates
- (2015) Jun Zou et al. GENERAL AND COMPARATIVE ENDOCRINOLOGY
- The sea lamprey meiotic map improves resolution of ancient vertebrate genome duplications
- (2015) Jeramiah J. Smith et al. GENOME RESEARCH
- Rooting the tree of life: the phylogenetic jury is still out
- (2015) Richard Gouy et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genomic data do not support comb jellies as the sister group to all other animals
- (2015) Davide Pisani et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular mechanisms underlying the exceptional adaptations of batoid fins
- (2015) Tetsuya Nakamura et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plastid establishment did not require a chlamydial partner
- (2015) Daryl Domman et al. Nature Communications
- The Treg/Th17 Axis: A Dynamic Balance Regulated by the Gut Microbiome
- (2015) Sara Omenetti et al. Frontiers in Immunology
- Transcriptomic analysis of the lesser spotted catshark (Scyliorhinus canicula) pancreas, liver and brain reveals molecular level conservation of vertebrate pancreas function
- (2014) John F Mulley et al. BMC GENOMICS
- The expanding repertoire of the IL-12 cytokine family in teleost fish: Identification of three paralogues each of the p35 and p40 genes in salmonids, and comparative analysis of their expression and modulation in Atlantic salmon Salmo salar
- (2014) Tiehui Wang et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Differential expression, modulation and bioactivity of distinct fish IL-12 isoforms: Implication towards the evolution of Th1-like immune responses
- (2014) Tiehui Wang et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- The Comb Jelly Opsins and the Origins of Animal Phototransduction
- (2014) Roberto Feuda et al. Genome Biology and Evolution
- Analysis of the Opsin Repertoire in the Tardigrade Hypsibius dujardini Provides Insights into the Evolution of Opsin Genes in Panarthropoda
- (2014) Lars Hering et al. Genome Biology and Evolution
- An Amino Acid Substitution-Selection Model Adjusts Residue Fitness to Improve Phylogenetic Estimation
- (2014) H.-C. Wang et al. MOLECULAR BIOLOGY AND EVOLUTION
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Venkatesh et al. reply
- (2014) Byrappa Venkatesh et al. NATURE
- Ghost locus appears
- (2014) James O. McInerney et al. NATURE
- Elephant shark genome provides unique insights into gnathostome evolution
- (2014) Byrappa Venkatesh et al. NATURE
- Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes
- (2014) Sofia A. V. Fortunato et al. NATURE
- TH2 and Treg candidate genes in elephant shark
- (2014) Johannes M. Dijkstra NATURE
- Transcriptome Profiling Reveals Higher Vertebrate Orthologous of Intra-Cytoplasmic Pattern Recognition Receptors in Grey Bamboo Shark
- (2014) Tirumurugaan Krishnaswamy Gopalan et al. PLoS One
- Host protective roles of type 2 immunity: Parasite killing and tissue repair, flip sides of the same coin
- (2014) Judith E. Allen et al. SEMINARS IN IMMUNOLOGY
- Characterization of the definitive classical calpain family of vertebrates using phylogenetic, evolutionary and expression analyses
- (2014) D. J. Macqueen et al. Open Biology
- Characterization of the heart transcriptome of the white shark (Carcharodon carcharias)
- (2013) Vincent P Richards et al. BMC GENOMICS
- Identification of a gene for an ancient cytokine, interleukin 15-like, in mammals; interleukins 2 and 15 co-evolved with this third family member, all sharing binding motifs for IL-15Rα
- (2013) Johannes M. Dijkstra et al. IMMUNOGENETICS
- Heterogeneous Models Place the Root of the Placental Mammal Phylogeny
- (2013) Claire C. Morgan et al. MOLECULAR BIOLOGY AND EVOLUTION
- Ancient Origins of Vertebrate-Specific Innate Antiviral Immunity
- (2013) Krishanu Mukherjee et al. MOLECULAR BIOLOGY AND EVOLUTION
- Ultrafast Approximation for Phylogenetic Bootstrap
- (2013) B. Q. Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
- (2013) Jeramiah J Smith et al. NATURE GENETICS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Th9 cells, new players in adaptive immunity
- (2013) Edgar Schmitt et al. TRENDS IN IMMUNOLOGY
- Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
- (2013) Keith R Bradnam et al. GigaScience
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- CD4+T Cells: Differentiation and Functions
- (2012) Rishi Vishal Luckheeram et al. Clinical & Developmental Immunology
- Bayesian Phylogenetics with BEAUti and the BEAST 1.7
- (2012) Alexei J. Drummond et al. MOLECULAR BIOLOGY AND EVOLUTION
- IL-12 family cytokines: immunological playmakers
- (2012) Dario A A Vignali et al. NATURE IMMUNOLOGY
- LIFR is a breast cancer metastasis suppressor upstream of the Hippo-YAP pathway and a prognostic marker
- (2012) Dahu Chen et al. NATURE MEDICINE
- Evolution of JAK-STAT Pathway Components: Mechanisms and Role in Immune System Development
- (2012) Clifford Liongue et al. PLoS One
- Follicular Helper CD4 T Cells (TFH)
- (2011) Shane Crotty Annual Review of Immunology
- Co-orthology of Pax4 and Pax6 to the fly eyeless gene: molecular phylogenetic, comparative genomic, and embryological analyses
- (2011) Tereza Manousaki et al. EVOLUTION & DEVELOPMENT
- Structure of a Domain-Swapped FOXP3 Dimer on DNA and Its Function in Regulatory T Cells
- (2011) Hozefa S. Bandukwala et al. IMMUNITY
- Molecular characterization and expression analysis of the putative interleukin 6 receptor (IL-6Rα and glycoprotein-130) in rainbow trout (Oncorhynchus mykiss): Salmonid IL-6Rα possesses a polymorphic N-terminal Ig domain with variable numbers of two repeats
- (2011) Maria M. Costa et al. IMMUNOGENETICS
- Acoelomorph flatworms are deuterostomes related to Xenoturbella
- (2011) Hervé Philippe et al. NATURE
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda
- (2011) L. I. Campbell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Natural Deletion of the HoxC Cluster in Elasmobranch Fishes
- (2011) B. L. King et al. SCIENCE
- Identification of Treg-like cells in Tetraodon: insight into the origin of regulatory T subsets during early vertebrate evolution
- (2010) Yi Wen et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- gp130 at the nexus of inflammation, autoimmunity, and cancer
- (2010) J. S. Silver et al. JOURNAL OF LEUKOCYTE BIOLOGY
- Evolutionary Origin and Phylogeny of the Modern Holocephalans (Chondrichthyes: Chimaeriformes): A Mitogenomic Perspective
- (2010) J. G. Inoue et al. MOLECULAR BIOLOGY AND EVOLUTION
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
- (2009) Nicolas Lartillot et al. BIOINFORMATICS
- Human Th17 cells: Are they different from murine Th17 cells?
- (2009) Francesco Annunziato et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- RORC2: The master of human Th17 cell programming
- (2009) Derya Unutmaz EUROPEAN JOURNAL OF IMMUNOLOGY
- How do Regulatory T Cells Work?
- (2009) A. Corthay SCANDINAVIAN JOURNAL OF IMMUNOLOGY
- Empirical profile mixture models for phylogenetic reconstruction
- (2008) Le Si Quang et al. BIOINFORMATICS
- Expansion of signaling genes for adaptive immune system evolution in early vertebrates
- (2008) Kinya Okada et al. BMC GENOMICS
- Characterization and expression analysis of an interleukin-7 homologue in the Japanese pufferfish, Takifugu rubripes
- (2008) Tomoya Kono et al. FEBS Journal
- The conditioned reconstructed process
- (2008) Tanja Gernhard JOURNAL OF THEORETICAL BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now