Characterization of the heart transcriptome of the white shark (Carcharodon carcharias)

De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum

(2013) Joshua P Der et al.   BMC GENOMICS

De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus)

(2012) Hilary C Miller et al.   BMC GENOMICS

Positive selection pressure within teleost toll-like receptors tlr21 and tlr22 subfamilies and their response to temperature stress and microbial components in zebrafish

(2012) Arvind Y. M. Sundaram et al.   MOLECULAR BIOLOGY REPORTS

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

(2012) V. CAHAIS et al.   Molecular Ecology Resources

Miiuy Croaker Hepcidin Gene and Comparative Analyses Reveal Evidence for Positive Selection

(2012) Tianjun Xu et al.   PLoS One

Sequencing and Analysis of Full-Length cDNAs, 5′-ESTs and 3′-ESTs from a Cartilaginous Fish, the Elephant Shark (Callorhinchus milii)

(2012) Yue Ying Tan et al.   PLoS One

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees

(2012) Q. Wang et al.   Database-The Journal of Biological Databases and Curation

A first estimate of white shark, Carcharodon carcharias, abundance off Central California

(2011) T. K. Chapple et al.   Biology Letters

Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome

(2011) Bonnie A Fraser et al.   BMC GENOMICS

The Multiple Shark Ig H Chain Genes Rearrange and Hypermutate Autonomously

(2011) C. Zhu et al.   JOURNAL OF IMMUNOLOGY

De novo transcriptome characterization and development of genomic tools for Scabiosa columbaria L. using next-generation sequencing techniques

(2011) F. ANGELONI et al.   Molecular Ecology Resources

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Patterns of Positive Selection and Neutral Evolution in the Protein-Coding Genes of Tetraodon and Takifugu

(2011) Juan I. Montoya-Burgos   PLoS One

A Novel Approach for Mining Polymorphic Microsatellite Markers In Silico

(2011) Joseph I. Hoffman et al.   PLoS One

Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature

(2011) I. Schneider et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate

(2010) Wiesław Babik et al.   BMC GENOMICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

When Technology Meets Conservation: Increased Microsatellite Marker Production Using 454 Genome Sequencing on the Endangered Okaloosa Darter (Etheostoma okaloosae)

(2010) E. V. Saarinen et al.   JOURNAL OF HEREDITY

Rapid Microsatellite Isolation from a Butterfly by De Novo Transcriptome Sequencing: Performance and a Comparison with AFLP-Derived Distances

(2010) Alexander S. Mikheyev et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish

(2009) Lieke M van der Aa et al.   BMC BIOLOGY

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

White Shark Offshore Habitat: A Behavioral and Environmental Characterization of the Eastern Pacific Shared Offshore Foraging Area

(2009) Nicole Nasby-Lucas et al.   PLoS One

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Patterns of Positive Selection in Six Mammalian Genomes

(2008) Carolin Kosiol et al.   PLoS Genetics