Insect Phylogenomics: Exploring the Source of Incongruence Using New Transcriptomic Data

A view from the edge of the forest: recent progress in understanding the relationships of the insect orders

(2012) David K Yeates et al.   AUSTRALIAN JOURNAL OF ENTOMOLOGY

Genomic and Morphological Evidence Converge to Resolve the Enigma of Strepsiptera

(2012) Oliver Niehuis et al.   CURRENT BIOLOGY

Isolation of Hox Cluster Genes from Insects Reveals an Accelerated Sequence Evolution Rate

(2012) Heike Hadrys et al.   PLoS One

Insect phylogenomics: results, problems and the impact of matrix composition

(2012) H. O. Letsch et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

On the head morphology of Phyllium and the phylogenetic relationships of Phasmatodea (Insecta)

(2011) Katrin Friedemann et al.   ACTA ZOOLOGICA

Advances in Insect Phylogeny at the Dawn of the Postgenomic Era

(2011) Michelle D. Trautwein et al.   Annual Review of Entomology

What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny

(2011) Gerard Talavera et al.   BMC EVOLUTIONARY BIOLOGY

Random Addition Concatenation Analysis: A Novel Approach to the Exploration of Phylogenomic Signal Reveals Strong Agreement between Core and Shell Genomic Partitions in the Cyanobacteria

(2011) Apurva Narechania et al.   Genome Biology and Evolution

Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda

(2011) B. M. von Reumont et al.   MOLECULAR BIOLOGY AND EVOLUTION

On the head morphology of Grylloblattodea (Insecta) and the systematic position of the order, with a new nomenclature for the head muscles of Dicondylia

(2011) BENJAMIN WIPFLER et al.   SYSTEMATIC ENTOMOLOGY

Monophyletic Polyneoptera recovered by wing base structure

(2011) KAZUNORI YOSHIZAWA   SYSTEMATIC ENTOMOLOGY

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

(2011) Hervé Philippe et al.   PLOS BIOLOGY

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

(2010) K. Meusemann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ribosomal protein genes of holometabolan insects reject the Halteria, instead revealing a close affinity of Strepsiptera with Coleoptera

(2010) Stuart J. Longhorn et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Expressed sequence tags reveal Proctotrupomorpha (minus Chalcidoidea) as sister to Aculeata (Hymenoptera: Insecta)

(2010) Barbara J. Sharanowski et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

FASconCAT: Convenient handling of data matrices

(2010) Patrick Kück et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences

(2010) Keisuke Ishiwata et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

9-Genes Reinforce the Phylogeny of Holometabola and Yield Alternate Views on the Phylogenetic Placement of Strepsiptera

(2010) Duane D. McKenna et al.   PLoS One

The Plecoptera – who are they? The problematic placement of stoneflies in the phylogenetic system of insects

(2009) Peter Zwick   AQUATIC INSECTS

OrthoSelect: a protocol for selecting orthologous groups in phylogenomics

(2009) Fabian Schreiber et al.   BMC BIOINFORMATICS

Single-copy nuclear genes resolve the phylogeny of the holometabolous insects

(2009) Brian M Wiegmann et al.   BMC BIOLOGY

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

(2009) Björn M von Reumont et al.   BMC EVOLUTIONARY BIOLOGY

HaMStR: Profile hidden markov model based search for orthologs in ESTs

(2009) Ingo Ebersberger et al.   BMC EVOLUTIONARY BIOLOGY

The mitochondrial genome of the 'twisted-wing parasite' Mengenilla australiensis (Insecta, Strepsiptera): a comparative study

(2009) Dino P McMahon et al.   BMC GENOMICS

A Phylogenomic Approach to Resolve the Basal Pterygote Divergence

(2009) S. Simon et al.   MOLECULAR BIOLOGY AND EVOLUTION

The complete mitochondrial genome of the cockroach Eupolyphaga sinensis (Blattaria: Polyphagidae) and the phylogenetic relationships within the Dictyoptera

(2009) Yan-yan Zhang et al.   MOLECULAR BIOLOGY REPORTS

On the value of Elongation factor-1α for reconstructing pterygote insect phylogeny

(2009) Sabrina Simon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Monte Carlo Approach Successfully Identifies Randomness in Multiple Sequence Alignments : A More Objective Means of Data Exclusion

(2009) Bernhard Misof et al.   SYSTEMATIC BIOLOGY

The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference

(2009) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

(2008) Stefanie Hartmann et al.   BMC EVOLUTIONARY BIOLOGY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Phylogenetic comparison of local length plasticity of the small subunit of nuclear rDNAs among all Hexapoda orders and the impact of hyper-length-variation on alignment

(2008) Qiang Xie et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence

(2008) Jerome C. Regier et al.   SYSTEMATIC BIOLOGY