What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny

Site-specific time heterogeneity of the substitution process and its impact on phylogenetic inference

(2011) Béatrice Roure et al.   BMC EVOLUTIONARY BIOLOGY

Acoelomorph flatworms are deuterostomes related to Xenoturbella

(2011) Hervé Philippe et al.   NATURE

Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda

(2010) Omar Rota-Stabelli et al.   Genome Biology and Evolution

Ribosomal protein genes of holometabolan insects reject the Halteria, instead revealing a close affinity of Strepsiptera with Coleoptera

(2010) Stuart J. Longhorn et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

9-Genes Reinforce the Phylogeny of Holometabola and Yield Alternate Views on the Phylogenetic Placement of Strepsiptera

(2010) Duane D. McKenna et al.   PLoS One

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

Phylo-evo-devo: combining phylogenetics with evolutionary developmental biology

(2009) Alessandro Minelli   BMC BIOLOGY

Phylogenetic analysis of the true water bugs (Insecta: Hemiptera: Heteroptera: Nepomorpha): evidence from mitochondrial genomes

(2009) Jimeng Hua et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenomics Revives Traditional Views on Deep Animal Relationships

(2009) Hervé Philippe et al.   CURRENT BIOLOGY

Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa

(2009) E. A. Sperling et al.   MOLECULAR BIOLOGY AND EVOLUTION

Empirical profile mixture models for phylogenetic reconstruction

(2008) Le Si Quang et al.   BIOINFORMATICS

Revealing pancrustacean relationships: Phylogenetic analysis of ribosomal protein genes places Collembola (springtails) in a monophyletic Hexapoda and reinforces the discrepancy between mitochondrial and nuclear DNA markers

(2008) MJTN Timmermans et al.   BMC EVOLUTIONARY BIOLOGY

Additional molecular support for the new chordate phylogeny

(2008) Frédéric Delsuc et al.   GENESIS

Mitochondrial genome organization and phylogeny of two vespid wasps

(2008) Stephen L. Cameron et al.   GENOME

A Site- and Time-Heterogeneous Model of Amino Acid Replacement

(2008) Samuel Blanquart et al.   MOLECULAR BIOLOGY AND EVOLUTION

Near Intron Positions Are Reliable Phylogenetic Markers: An Application to Holometabolous Insects

(2008) Veiko Krauss et al.   MOLECULAR BIOLOGY AND EVOLUTION

A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data

(2008) J. Daniel Fenn et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Arachnid relationships based on mitochondrial genomes: Asymmetric nucleotide and amino acid bias affects phylogenetic analyses

(2008) Susan E. Masta et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

(2008) N. Lartillot et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES