Insect phylogenomics: results, problems and the impact of matrix composition

Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data

(2011) John J. Wiens et al.   SYSTEMATIC BIOLOGY

On the head morphology of Grylloblattodea (Insecta) and the systematic position of the order, with a new nomenclature for the head muscles of Dicondylia

(2011) BENJAMIN WIPFLER et al.   SYSTEMATIC ENTOMOLOGY

Higher-level phylogeny of the insect order Hemiptera: is Auchenorrhyncha really paraphyletic?

(2011) JASON R. CRYAN et al.   SYSTEMATIC ENTOMOLOGY

Monophyletic Polyneoptera recovered by wing base structure

(2011) KAZUNORI YOSHIZAWA   SYSTEMATIC ENTOMOLOGY

Morphological and molecular evidence converge upon a robust phylogeny of the megadiverse Holometabola

(2010) Rolf G. Beutel et al.   CLADISTICS

The influence of a hot environment on parental cooperation of a ground-nesting shorebird, the Kentish plover Charadrius alexandrinus

(2010) Monif AlRashidi et al.   Frontiers in Zoology

The Impact of rRNA Secondary Structure Consideration in Alignment and Tree Reconstruction: Simulated Data and a Case Study on the Phylogeny of Hexapods

(2010) Harald O. Letsch et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

(2010) K. Meusemann et al.   MOLECULAR BIOLOGY AND EVOLUTION

FASconCAT: Convenient handling of data matrices

(2010) Patrick Kück et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences

(2010) Keisuke Ishiwata et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Single-copy nuclear genes resolve the phylogeny of the holometabolous insects

(2009) Brian M Wiegmann et al.   BMC BIOLOGY

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

(2009) Björn M von Reumont et al.   BMC EVOLUTIONARY BIOLOGY

HaMStR: Profile hidden markov model based search for orthologs in ESTs

(2009) Ingo Ebersberger et al.   BMC EVOLUTIONARY BIOLOGY

The complete mitochondrial genomes of two band-winged grasshoppers, Gastrimargus marmoratus and Oedaleus asiaticus

(2009) Chuan Ma et al.   BMC GENOMICS

A Phylogenomic Approach to Resolve the Basal Pterygote Divergence

(2009) S. Simon et al.   MOLECULAR BIOLOGY AND EVOLUTION

The complete mitochondrial genome of the cockroach Eupolyphaga sinensis (Blattaria: Polyphagidae) and the phylogenetic relationships within the Dictyoptera

(2009) Yan-yan Zhang et al.   MOLECULAR BIOLOGY REPORTS

On the value of Elongation factor-1α for reconstructing pterygote insect phylogeny

(2009) Sabrina Simon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

When Trees Grow Too Long: Investigating the Causes of Highly Inaccurate Bayesian Branch-Length Estimates

(2009) Jeremy M. Brown et al.   SYSTEMATIC BIOLOGY

A Monte Carlo Approach Successfully Identifies Randomness in Multiple Sequence Alignments : A More Objective Means of Data Exclusion

(2009) Bernhard Misof et al.   SYSTEMATIC BIOLOGY

The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference

(2009) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

Cryptic Failure of Partitioned Bayesian Phylogenetic Analyses: Lost in the Land of Long Trees

(2009) David C. Marshall   SYSTEMATIC BIOLOGY

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

(2008) Kazutaka Katoh et al.   BMC BIOINFORMATICS

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

(2008) Stefanie Hartmann et al.   BMC EVOLUTIONARY BIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary scenarios for unusual attachment devices of Phasmatodea and Mantophasmatodea (Insecta)

(2008) ROLF G. BEUTEL et al.   SYSTEMATIC ENTOMOLOGY

Ancient Rapid Radiations of Insects: Challenges for Phylogenetic Analysis

(2007) James B. Whitfield et al.   Annual Review of Entomology