Chemical reactivity drives spatiotemporal organisation of bacterial metabolism
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Title
Chemical reactivity drives spatiotemporal organisation of bacterial metabolism
Authors
Keywords
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Journal
FEMS MICROBIOLOGY REVIEWS
Volume -, Issue -, Pages n/a-n/a
Publisher
Oxford University Press (OUP)
Online
2014-09-16
DOI
10.1111/1574-6976.12089
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- (2011) W. Bonacci et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2010) Haike Antelmann et al. ANTIOXIDANTS & REDOX SIGNALING
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- (2009) Johnson Cheung et al. MOLECULAR MICROBIOLOGY
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- (2009) Itai Sharon et al. NATURE
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- (2009) John E Dueber et al. NATURE BIOTECHNOLOGY
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- (2009) Bryson D Bennett et al. Nature Chemical Biology
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