Noncoding RNA response to xenobiotic exposure: an indicator of toxicity and carcinogenicity

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(2016)   INTERNATIONAL JOURNAL OF CANCER

Identification of tubular injury microRNA biomarkers in urine: comparison of next-generation sequencing and qPCR-based profiling platforms

(2014) Rounak Nassirpour et al.   BMC GENOMICS

The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones

(2014) Thomas R. Cech et al.   CELL

Aberrant miRNA profiles associated with chronic benzene poisoning

(2014) Wenlin Bai et al.   EXPERIMENTAL AND MOLECULAR PATHOLOGY

The effects of environmental chemical carcinogens on the microRNA machinery

(2014) A. Izzotti et al.   INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH

Bisphenol-A and diethylstilbestrol exposure induces the expression of breast cancer associated long noncoding RNA HOTAIR in vitro and in vivo

(2014) Arunoday Bhan et al.   JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY

Clinical relevance of circulating cell-free microRNAs in cancer

(2014) Heidi Schwarzenbach et al.   Nature Reviews Clinical Oncology

Dose- and Time-Dependent Epigenetic Changes in the Livers of Fisher 344 Rats Exposed to Furan

(2014) Aline de Conti et al.   TOXICOLOGICAL SCIENCES

Aberrant microRNA Expression Likely Controls RAS Oncogene Activation During Malignant Transformation of Human Prostate Epithelial and Stem Cells by Arsenic

(2014) Ntube N. O. Ngalame et al.   TOXICOLOGICAL SCIENCES

Involvement of miRNAs in the early phase of halothane-induced liver injury

(2014) Shinya Endo et al.   TOXICOLOGY

Genome-wide miRNA-profiling of aflatoxin B1-induced hepatic injury using deep sequencing

(2014) Weiqiang Yang et al.   TOXICOLOGY LETTERS

The cooked meat-derived mammary carcinogen 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP) elicits estrogenic-like microRNA responses in breast cancer cells

(2014) M.D. Papaioannou et al.   TOXICOLOGY LETTERS

Dysregulated miR1254 and miR579 for cardiotoxicity in patients treated with bevacizumab in colorectal cancer

(2014) Ziyuan Zhao et al.   TUMOR BIOLOGY

MicroRNAs as potential circulating biomarkers of drug-induced liver injury: key current and future issues for translation to humans

(2014) Robert James Hornby et al.   Expert Review of Clinical Pharmacology

Incorporating epigenetic data into the risk assessment process for the toxic metals arsenic, cadmium, chromium, lead, and mercury: strategies and challenges

(2014) Paul D. Ray et al.   Frontiers in Genetics

Endoplasmic reticulum stress signaling: the microRNA connection

(2013) Marion Maurel et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Characterization of a Novel Long Noncoding RNA, SCAL1, Induced by Cigarette Smoke and Elevated in Lung Cancer Cell Lines

(2013) Philip Thai et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

Induction of the liver cancer-down-regulated long noncoding RNA uc002mbe.2 mediates trichostatin-induced apoptosis of liver cancer cells

(2013) Hui Yang et al.   BIOCHEMICAL PHARMACOLOGY

A novel long non-coding RNA-ARA: Adriamycin Resistance Associated

(2013) Min Jiang et al.   BIOCHEMICAL PHARMACOLOGY

Downregulation of microRNA-515-5p by the Estrogen Receptor Modulates Sphingosine Kinase 1 and Breast Cancer Cell Proliferation

(2013) F. G. Pinho et al.   CANCER RESEARCH

Relationships between pulmonary micro-RNA and proteome profiles, systemic cytogenetic damage and lung tumors in cigarette smoke-exposed mice treated with chemopreventive agents

(2013) Alberto Izzotti et al.   CARCINOGENESIS

Characteristics of long non-coding RNA and its relation to hepatocellular carcinoma

(2013) J.-L. Huang et al.   CARCINOGENESIS

Molecular basis of cancer-therapy-induced cardiotoxicity: introducing microRNA biomarkers for early assessment of subclinical myocardial injury

(2013) Hardip Sandhu et al.   CLINICAL SCIENCE

MicroRNAs as therapeutic targets in chemoresistance

(2013) Michela Garofalo et al.   DRUG RESISTANCE UPDATES

MicroRNA-17∼92 plays a causative role in lymphomagenesis by coordinating multiple oncogenic pathways

(2013) Hyun Yong Jin et al.   EMBO JOURNAL

Developmental Programming: Gestational Bisphenol-A Treatment Alters Trajectory of Fetal Ovarian Gene Expression

(2013) Almudena Veiga-Lopez et al.   ENDOCRINOLOGY

Formaldehyde and Epigenetic Alterations: MicroRNA Changes in the Nasal Epithelium of Nonhuman Primates

(2013) Julia E. Rager et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

MicroRNA Expression in Response to Controlled Exposure to Diesel Exhaust: Attenuation by the Antioxidant N -Acetylcysteine in a Randomized Crossover Study

(2013) Masatsugu Yamamoto et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Involvement of epigenetics and microRNA-29b in the urethane induced inception and establishment of mouse lung tumors

(2013) Manuraj Pandey et al.   EXPERIMENTAL AND MOLECULAR PATHOLOGY

Long Noncoding RNAs: Past, Present, and Future

(2013) J. T. Y. Kung et al.   GENETICS

Cigarette smoke mediates epigenetic repression of miR-487b during pulmonary carcinogenesis

(2013) Sichuan Xi et al.   JOURNAL OF CLINICAL INVESTIGATION

Antisense Transcript Long Noncoding RNA (lncRNA) HOTAIR is Transcriptionally Induced by Estradiol

(2013) Arunoday Bhan et al.   JOURNAL OF MOLECULAR BIOLOGY

Effect of fetal exposure to bisphenol A on brain mediated by X-chromosome inactivation

(2013) Takayuki Kumamoto et al.   JOURNAL OF TOXICOLOGICAL SCIENCES

The long non-coding RNA ERIC is regulated by E2F and modulates the cellular response to DNA damage

(2013) Orit Feldstein et al.   Molecular Cancer

Development and validation of a microRNA-based diagnostic assay for classification of renal cell carcinomas

(2013) Yael Spector et al.   Molecular Oncology

Liver-specific microRNAs as biomarkers of nanomaterial-induced liver damage

(2013) Takashi Nagano et al.   NANOTECHNOLOGY

MicroRNAs and other non-coding RNAs as targets for anticancer drug development

(2013) Hui Ling et al.   NATURE REVIEWS DRUG DISCOVERY

The Noncoding RNA Expression Profile and the Effect of lncRNA AK126698 on Cisplatin Resistance in Non-Small-Cell Lung Cancer Cell

(2013) Yong Yang et al.   PLoS One

Aflatoxin B1 Negatively Regulates Wnt/β-Catenin Signaling Pathway through Activating miR-33a

(2013) Yi Fang et al.   PLoS One

Cancer Genome Landscapes

(2013) B. Vogelstein et al.   SCIENCE

Arsenic exposure triggers a shift in microRNA expression

(2013) Elena Sturchio et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Integrative Toxicopathological Evaluation of Aflatoxin B1 Exposure in F344 Rats

(2013) Guoqing Qian et al.   TOXICOLOGIC PATHOLOGY

Differential Expression of Long Noncoding RNAs in the Livers of Female B6C3F1 Mice Exposed to the Carcinogen Furan

(2013) Leslie Recio et al.   TOXICOLOGICAL SCIENCES

Time and dose-dependent effects of phenobarbital on the rat liver miRNAome

(2013) Costas Koufaris et al.   TOXICOLOGY

Alteration of serum miR-206 and miR-133b is associated with lung carcinogenesis induced by 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone

(2013) Jianjun Wu et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Case study on the utility of hepatic global gene expression profiling in the risk assessment of the carcinogen furan

(2013) Anna Francina Jackson et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

LncRNA-DQ786227-mediated cell malignant transformation induced by benzo(a)pyrene

(2013) Liyun Gao et al.   TOXICOLOGY LETTERS

Cell cycle changes mediated by the p53/miR-34c axis are involved in the malignant transformation of human bronchial epithelial cells by benzo[a]pyrene

(2013) Zhuyu Han et al.   TOXICOLOGY LETTERS

Estrogen Mediated-Activation of miR-191/425 Cluster Modulates Tumorigenicity of Breast Cancer Cells Depending on Estrogen Receptor Status

(2013) Gianpiero Di Leva et al.   PLoS Genetics

Multiple knockout mouse models reveal lincRNAs are required for life and brain development

(2013) Martin Sauvageau et al.   eLife

The role of microRNA in the response to cisplatin treatment: Table 1

(2012) Ross M. Drayton   BIOCHEMICAL SOCIETY TRANSACTIONS

Integrative transcriptome analysis suggest processing of a subset of long non-coding RNAs to small RNAs

(2012) Saakshi Jalali et al.   Biology Direct

Differential expression of long non-coding RNAs during genotoxic stress-induced apoptosis in HeLa and MCF-7 cells

(2012) Emre Özgür et al.   CLINICAL AND EXPERIMENTAL MEDICINE

miR-33 controls the expression of biliary transporters, and mediates statin- and diet-induced hepatotoxicity

(2012) Ryan M. Allen et al.   EMBO Molecular Medicine

Perinatal Programming of Adult Rat Germ Cell Death After Exposure to Xenoestrogens: Role of microRNA miR-29 Family in the Down-Regulation of DNA Methyltransferases and Mcl-1

(2012) Léo Meunier et al.   ENDOCRINOLOGY

Modulation of microrna expression by volatile organic compounds in mouse lung

(2012) Fan Wang et al.   ENVIRONMENTAL TOXICOLOGY

Discovery of hundreds of mirtrons in mouse and human small RNA data

(2012) E. Ladewig et al.   GENOME RESEARCH

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

Furan in heat-treated foods: Formation, exposure, toxicity, and aspects of risk assessment

(2012) Sabrina Moro et al.   MOLECULAR NUTRITION & FOOD RESEARCH

MicroRNA profiling: approaches and considerations

(2012) Colin C. Pritchard et al.   NATURE REVIEWS GENETICS

Non-coding RNAs—Novel targets in neurotoxicity

(2012) Tamara L. Tal et al.   NEUROTOXICOLOGY

Direct regulation of microRNA biogenesis and expression by estrogen receptor beta in hormone-responsive breast cancer

(2012) O Paris et al.   ONCOGENE

A Second-Generation MicroRNA-Based Assay for Diagnosing Tumor Tissue Origin

(2012) E. Meiri et al.   ONCOLOGIST

Perturbation of microRNAs in Rat Heart during Chronic Doxorubicin Treatment

(2012) Caterina Vacchi-Suzzi et al.   PLoS One

Are Differences in MicroRNA Regulation Implicated in Species-Dependent Response to Toxicological Exposures?

(2012) Costas Koufaris et al.   TOXICOLOGICAL SCIENCES

Endocrine Disruptors Fludioxonil and Fenhexamid Stimulate miR-21 Expression in Breast Cancer Cells

(2012) Yun Teng et al.   TOXICOLOGICAL SCIENCES

Identification of Dlk1-Dio3 Imprinted Gene Cluster Noncoding RNAs as Novel Candidate Biomarkers for Liver Tumor Promotion

(2012) Harri Lempiäinen et al.   TOXICOLOGICAL SCIENCES

Hepatic MicroRNA Profiles Offer Predictive and Mechanistic Insights After Exposure to Genotoxic and Epigenetic Hepatocarcinogens

(2012) Costas Koufaris et al.   TOXICOLOGICAL SCIENCES

Expression, Circulation, and Excretion Profile of MicroRNA-21, -155, and -18a Following Acute Kidney Injury

(2012) Janani Saikumar et al.   TOXICOLOGICAL SCIENCES

miRNAs and estrogen action

(2012) Carolyn M. Klinge   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Effects of Oestrogen on MicroRNA Expression in Hormone-Responsive Breast Cancer Cells

(2012) Lorenzo Ferraro et al.   Hormones & Cancer

Preferential regulation of miRNA targets by environmental chemicals in the human genome

(2011) Xudong Wu et al.   BMC GENOMICS

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Circulating microRNAs as potential markers of human drug-induced liver injury

(2011) Philip J. Starkey Lewis et al.   HEPATOLOGY

Environmental chemical exposures and human epigenetics

(2011) Lifang Hou et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

DLK1-DIO3 Genomic Imprinted MicroRNA Cluster at 14q32.2 Defines a Stemlike Subtype of Hepatocellular Carcinoma Associated with Poor Survival

(2011) John M. Luk et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Alternative miRNA Biogenesis Pathways and the Interpretation of Core miRNA Pathway Mutants

(2011) Jr-Shiuan Yang et al.   MOLECULAR CELL

MicroRNA expression in the livers of inbred mice

(2011) Daniel M. Gatti et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Mutagens interfere with microRNA maturation by inhibiting DICER. An in silico biology analysis

(2011) Matteo Ligorio et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements

(2011) Chenguang Gong et al.   NATURE

Pseudogenes: Pseudo-functional or key regulators in health and disease?

(2011) R. C. Pink et al.   RNA

MicroRNAs in the Pathogenesis of Cancer

(2011) Francesca Lovat et al.   SEMINARS IN ONCOLOGY

Toxicological Implications of Modulation of Gene Expression by MicroRNAs

(2011) Tsuyoshi Yokoi et al.   TOXICOLOGICAL SCIENCES

Aberrant Expression of miR-638 Contributes to Benzo(a)pyrene-Induced Human Cell Transformation

(2011) Daochuan Li et al.   TOXICOLOGICAL SCIENCES

miR-190-Mediated Downregulation of PHLPP Contributes to Arsenic-Induced Akt Activation and Carcinogenesis

(2011) Kevin Beezhold et al.   TOXICOLOGICAL SCIENCES

Arsenic Exposure and Toxicology: A Historical Perspective

(2011) Michael F. Hughes et al.   TOXICOLOGICAL SCIENCES

Gene expression and epigenetic changes by furan in rat liver

(2011) Tao Chen et al.   TOXICOLOGY

Identification of early target genes of aflatoxin B1 in human hepatocytes, inter-individual variability and comparison with other genotoxic compounds

(2011) Rozenn Josse et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

The role of miR-506 in transformed 16HBE cells induced by anti-benzo[a]pyrene-trans-7,8-dihydrodiol-9,10-epoxide

(2011) Yao Zhao et al.   TOXICOLOGY LETTERS

Structural and Functional Differences in the Long Non-Coding RNA Hotair in Mouse and Human

(2011) Patrick Schorderet et al.   PLoS Genetics

MicroRNA-mediated drug resistance in breast cancer

(2011) Kristy R. Kutanzi et al.   Clinical Epigenetics

MicroRNAs and their isomiRs function cooperatively to target common biological pathways

(2011) Nicole Cloonan et al.   GENOME BIOLOGY

Estrogen Receptor α Controls a Gene Network in Luminal-Like Breast Cancer Cells Comprising Multiple Transcription Factors and MicroRNAs

(2010) Luigi Cicatiello et al.   AMERICAN JOURNAL OF PATHOLOGY

Epigenetically Deregulated microRNA-375 Is Involved in a Positive Feedback Loop with Estrogen Receptor   in Breast Cancer Cells

(2010) P. de Souza Rocha Simonini et al.   CANCER RESEARCH

The Long Noncoding RNA, Jpx, Is a Molecular Switch for X Chromosome Inactivation

(2010) Di Tian et al.   CELL

Low Doses of the Carcinogen Furan Alter Cell Cycle and Apoptosis Gene Expression in Rat Liver Independent of DNA Methylation

(2010) Tao Chen et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Epigenetic Changes Induced by Air Toxics: Formaldehyde Exposure Alters miRNA Expression Profiles in Human Lung Cells

(2010) Julia E. Rager et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq

(2010) Jing Zhao et al.   MOLECULAR CELL

Dose-responsiveness and persistence of microRNA expression alterations induced by cigarette smoke in mouse lung

(2010) Alberto Izzotti et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

OncomiR addiction in an in vivo model of microRNA-21-induced pre-B-cell lymphoma

(2010) Pedro P. Medina et al.   NATURE

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

(2010) Rajnish A. Gupta et al.   NATURE

The widespread regulation of microRNA biogenesis, function and decay

(2010) Jacek Krol et al.   NATURE REVIEWS GENETICS

lncRNAdb: a reference database for long noncoding RNAs

(2010) Paulo P. Amaral et al.   NUCLEIC ACIDS RESEARCH

CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer

(2010) Jiayi Wang et al.   NUCLEIC ACIDS RESEARCH

Cigarette Smoke Induces C/EBP-β-Mediated Activation of miR-31 in Normal Human Respiratory Epithelia and Lung Cancer Cells

(2010) Sichuan Xi et al.   PLoS One

Bisphenol A exposure leads to specific microRNA alterations in placental cells

(2010) Michele Avissar-Whiting et al.   REPRODUCTIVE TOXICOLOGY

Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes

(2010) M.-C. Tsai et al.   SCIENCE

Evidence of Oxidative Stress and Associated DNA Damage, Increased Proliferative Drive, and Altered Gene Expression in Rat Liver Produced by the Cholangiocarcinogenic Agent Furan

(2010) K. C. Hickling et al.   TOXICOLOGIC PATHOLOGY

miR-106a–mediated Malignant Transformation of Cells Induced by Anti-benzo[a]pyrene-trans-7,8-diol-9,10-epoxide

(2010) Yiguo Jiang et al.   TOXICOLOGICAL SCIENCES

Aflatoxin: A 50-Year Odyssey of Mechanistic and Translational Toxicology

(2010) T. W. Kensler et al.   TOXICOLOGICAL SCIENCES

miR-22 functions as a micro-oncogene in transformed human bronchial epithelial cells induced by anti-benzo[a]pyrene-7,8-diol-9,10-epoxide

(2010) Linhua Liu et al.   TOXICOLOGY IN VITRO

MicroRNAs in Cancer

(2009) Ramiro Garzon et al.   Annual Review of Medicine

Clear Differences in Levels of a Formaldehyde-DNA Adduct in Leukocytes of Smokers and Nonsmokers

(2009) M. Wang et al.   CANCER RESEARCH

Xenoestrogen-Induced Epigenetic Repression of microRNA-9-3 in Breast Epithelial Cells

(2009) P.-Y. Hsu et al.   CANCER RESEARCH

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

Dicer is regulated by cellular stresses and interferons

(2009) Jennifer L. Wiesen et al.   MOLECULAR IMMUNOLOGY

MiR-320 and miR-494 affect cell cycles of primary murine bronchial epithelial cells exposed to benzo[a]pyrene

(2009) Huihan Duan et al.   TOXICOLOGY IN VITRO

Advances in Chemical Carcinogenesis: A Historical Review and Prospective

(2008) L. A. Loeb et al.   CANCER RESEARCH

Differential expression of microRNAs in early-stage neoplastic transformation in the lungs of F344 rats chronically treated with the tobacco carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone

(2008) Stephen Kalscheuer et al.   CARCINOGENESIS

Survey of furan in heat processed foods by headspace gas chromatography/mass spectrometry and estimated adult exposure

(2008) Kim M. Morehouse et al.   Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure & Risk Assessment

Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

(2008) Wenqiang Yu et al.   NATURE

Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

(2008) Xiangting Wang et al.   NATURE

MicroRNAs accurately identify cancer tissue origin

(2008) Nitzan Rosenfeld et al.   NATURE BIOTECHNOLOGY

Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome

(2008) J. Zhao et al.   SCIENCE