Detection and mapping of QTL for temperature tolerance and body size in Chinook salmon (Oncorhynchus tshawytscha) using genotyping by sequencing

THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

(2013) Pierre-Alexandre Gagnaire et al.   EVOLUTION

Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish

(2013) Ian R. Bradbury et al.   Evolutionary Applications

Adaptive plasticity and genetic divergence in feeding efficiency during parallel adaptive radiation of whitefish (Coregonusspp.)

(2013) B. Lundsgaard-Hansen et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Variation in temperature tolerance among families of Atlantic salmon (Salmo salar) is associated with hypoxia tolerance, ventricle size and myoglobin level

(2013) K. Anttila et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Thermal adaptation and acclimation of ectotherms from differing aquatic climates

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Centennial-scale fluctuations and regional complexity characterize Pacific salmon population dynamics over the past five centuries

(2013) L. A. Rogers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Architecture of Migration-Related Traits in Rainbow and Steelhead Trout, Oncorhynchus mykis s

(2013) Benjamin C. Hecht et al.   G3-Genes Genomes Genetics

Evaluating Adaptive Divergence Between Migratory and Nonmigratory Ecotypes of a Salmonid Fish, Oncorhynchus mykiss

(2013) Matthew C. Hale et al.   G3-Genes Genomes Genetics

Genetic mapping of quantitative trait loci (QTL) for body-weight in Atlantic salmon (Salmo salar) using a 6.5K SNP array

(2012) Alejandro P. Gutierrez et al.   AQUACULTURE

Population prioritization for conservation of imperilled warmwater fishes in an arid-region drainage

(2012) Robert W. Clarkson et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Meiotic maps of sockeye salmon derived from massively parallel DNA sequencing

(2012) Meredith V Everett et al.   BMC GENOMICS

Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon

(2012) Ross D Houston et al.   BMC GENOMICS

Climate change, fisheries, and aquaculture: trends and consequences for Canadian marine biodiversity 1This manuscript is a companion paper to Vander Zwaag et al. (doi:10.1139/a2012-013) and Hutchings et al. (doi:10.1139/er-2012-0049) also appearing in this issue. These three papers comprise an edited version of a February 2012 Royal Society of Canada Expert Panel Report.

(2012) Jeffrey A. Hutchings et al.   ENVIRONMENTAL REVIEWS

Contrasting effects of climate change in continental vs. oceanic environments on population persistence and microevolution of Atlantic salmon

(2012) Cyril Piou et al.   GLOBAL CHANGE BIOLOGY

Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation

(2012) A. Whitehead   JOURNAL OF EXPERIMENTAL BIOLOGY

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

(2012) I. Keller et al.   MOLECULAR ECOLOGY

Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish(Coregonus clupeaformis)

(2012) Pierre-Alexandre Gagnaire et al.   MOLECULAR ECOLOGY

Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout

(2012) Benjamin C. Hecht et al.   MOLECULAR ECOLOGY

Sex and Proximity to Reproductive Maturity Influence the Survival, Final Maturation, and Blood Physiology of Pacific Salmon When Exposed to High Temperature during a Simulated Migration

(2012) Ken M. Jeffries et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

A RAD Tag Derived Marker Based Eggplant Linkage Map and the Location of QTLs Determining Anthocyanin Pigmentation

(2012) Lorenzo Barchi et al.   PLoS One

Potential climate change impacts on thermal habitats of Pacific salmon (Oncorhynchus spp.) in the North Pacific Ocean and adjacent seas

(2011) Omar I. Abdul-Aziz et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

(2011) Angel Amores et al.   GENETICS

Scale and the detection of climatic influences on the productivity of salmon populations

(2011) LAUREN A. ROGERS et al.   GLOBAL CHANGE BIOLOGY

Behaviour during elevated water temperatures: can physiology explain movement of juvenile Atlantic salmon to cool water?

(2011) Cindy Breau et al.   JOURNAL OF ANIMAL ECOLOGY

A Second Generation Integrated Map of the Rainbow Trout (Oncorhynchus mykiss) Genome: Analysis of Conserved Synteny with Model Fish Genomes

(2011) Yniv Palti et al.   MARINE BIOTECHNOLOGY

Transcriptomics of environmental acclimatization and survival in wild adult Pacific sockeye salmon (Oncorhynchus nerka) during spawning migration

(2011) TYLER G. EVANS et al.   MOLECULAR ECOLOGY

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Discovery and characterization of single nucleotide polymorphisms in Chinook salmon,Oncorhynchus tshawytscha

(2011) A. J. CLEMENTO et al.   Molecular Ecology Resources

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Identification of genes associated with heat tolerance in Arctic charr exposed to acute thermal stress

(2011) Nicole L. Quinn et al.   PHYSIOLOGICAL GENOMICS

Competing Conservation Objectives for Predators and Prey: Estimating Killer Whale Prey Requirements for Chinook Salmon

(2011) Rob Williams et al.   PLoS One

Differences in Thermal Tolerance Among Sockeye Salmon Populations

(2011) E. J. Eliason et al.   SCIENCE

Resolving Adaptive and Demographic Divergence among Chinook Salmon Populations in the Columbia River Basin

(2011) Andrew P. Matala et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Does Lower Crab Creek in the Eastern Washington Desert Have a Native Population of Chinook Salmon?

(2011) Maureen P. Small et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Climate Change, Ecosystem Impacts, and Management for Pacific Salmon

(2010) Daniel E. Schindler et al.   FISHERIES

Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids

(2010) J. E. SEEB et al.   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Juvenile coho salmon behavioural characteristics in Klamath river summer thermal refugia

(2010) R. Sutton et al.   RIVER RESEARCH AND APPLICATIONS

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library

(2009) Cecilia Sánchez et al.   BMC GENOMICS

Environment, antecedents and climate change: lessons from the study of temperature physiology and river migration of salmonids

(2009) A. P. Farrell   JOURNAL OF EXPERIMENTAL BIOLOGY

Effects of temperature on disease progression and swimming stamina inIchthyophonus-infected rainbow trout,Oncorhynchus mykiss(Walbaum)

(2009) R Kocan et al.   JOURNAL OF FISH DISEASES

Temperature and Flow Effects on Migration Timing of Chinook Salmon Smolts

(2009) Gregory E. Sykes et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)

(2008) Roy G Danzmann et al.   BMC GENOMICS

PERSPECTIVE: Potential responses to climate change in organisms with complex life histories: evolution and plasticity in Pacific salmon

(2008) L. G. Crozier et al.   Evolutionary Applications

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

ECOLOGY: Physiology and Climate Change

(2008) H. O. Portner et al.   SCIENCE

Identification of Novel Single-Nucleotide Polymorphisms in Chinook Salmon and Variation among Life History Types

(2008) Nathan R. Campbell et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Evolutionary change in human-altered environments

(2007) THOMAS B. SMITH et al.   MOLECULAR ECOLOGY