Meiotic maps of sockeye salmon derived from massively parallel DNA sequencing

Single nucleotide polymorphisms unravel hierarchical divergence and signatures of selection among Alaskan sockeye salmon (Oncorhynchus nerka) populations

(2011) Daniel Gomez-Uchida et al.   BMC EVOLUTIONARY BIOLOGY

Venom gland transcriptomes of two elapid snakes (Bungarus multicinctus and Naja atra) and evolution of toxin genes

(2011) Yu Jiang et al.   BMC GENOMICS

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

(2011) Yada Chutimanitsakun et al.   BMC GENOMICS

Identification of the Sex Chromosomes of Brown Trout (Salmo trutta) and Their Comparison with the Corresponding Chromosomes in Atlantic Salmon (Salmo salar) and Rainbow Trout (Oncorhynchus mykiss)

(2011) J. Li et al.   CYTOGENETIC AND GENOME RESEARCH

The Sockeye Salmon Neo-Y Chromosome Is a Fusion between Linkage Groups Orthologous to the Coho Y Chromosome and the Long Arm of Rainbow Trout Chromosome 2

(2011) J. Faber-Hammond et al.   CYTOGENETIC AND GENOME RESEARCH

Temperature-associated population diversity in salmon confers benefits to mobile consumers

(2011) Casey P. Ruff et al.   ECOLOGY

Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

(2011) Angel Amores et al.   GENETICS

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Linkage Mapping and Comparative Genomics Using Next-Generation RAD Sequencing of a Non-Model Organism

(2011) Simon W. Baxter et al.   PLoS One

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

Differences in Thermal Tolerance Among Sockeye Salmon Populations

(2011) E. J. Eliason et al.   SCIENCE

Genomic Signatures Predict Migration and Spawning Failure in Wild Canadian Salmon

(2011) K. M. Miller et al.   SCIENCE

Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne

(2011) W. F. Pfender et al.   THEORETICAL AND APPLIED GENETICS

Noncoding Sequences Near Duplicated Genes Evolve Rapidly

(2010) Dennis Kostka et al.   Genome Biology and Evolution

Infection of gill and kidney of Fraser River sockeye salmon, Oncorhynchus nerka (Walbaum), by Parvicapsula minibicornis and its effect on host physiology

(2010) M J Bradford et al.   JOURNAL OF FISH DISEASES

Population diversity and the portfolio effect in an exploited species

(2010) Daniel E. Schindler et al.   NATURE

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome mapping in intensively studied wild vertebrate populations

(2010) Jon Slate et al.   TRENDS IN GENETICS

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Polyploidy and angiosperm diversification

(2009) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

A first generation BAC-based physical map of the rainbow trout genome

(2009) Yniv Palti et al.   BMC GENOMICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A genetic linkage map for coho salmon (Oncorhynchus kisutch)

(2008) E. K. McClelland et al.   ANIMAL GENETICS

A salmonid EST genomic study: genes, duplications, phylogeny and microarrays

(2008) Ben F Koop et al.   BMC GENOMICS

A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers

(2008) Thomas Moen et al.   BMC GENOMICS

Gene mapping in the wild with SNPs: guidelines and future directions

(2008) Jon Slate et al.   GENETICA

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One