Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids

Identification of single nucleotide polymorphisms in candidate genes for growth and reproduction in a nonmodel organism; the Atlantic cod,Gadus morhua

(2011) JAKOB HEMMER-HANSEN et al.   Molecular Ecology Resources

A simple route to single-nucleotide polymorphisms in a nonmodel species: identification and characterization of SNPs in the Artic ringed seal (Pusa hispida hispida)

(2011) MORTEN TANGE OLSEN et al.   Molecular Ecology Resources

Single nucleotide polymorphisms across a species’ range: implications for conservation studies of Pacific salmon

(2011) L. W. SEEB et al.   Molecular Ecology Resources

Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome

(2011) M. V. EVERETT et al.   Molecular Ecology Resources

Generic genetic differences between farmed and wild Atlantic salmon identified from a 7K SNP-chip

(2011) STEN KARLSSON et al.   Molecular Ecology Resources

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonusspp. Salmonidae)

(2010) SÉBASTIEN RENAUT et al.   MOLECULAR ECOLOGY

High-Resolution Melting Analysis for the Discovery of Novel Single-Nucleotide Polymorphisms in Rainbow and Cutthroat Trout for Species Identification

(2010) Molly T. McGlauflin et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Summer–Fall Distribution of Stocks of Immature Sockeye Salmon in the Bering Sea as Revealed by Single-Nucleotide Polymorphisms

(2010) C. Habicht et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

The Next Generation Becomes the Now Generation

(2010) Diego A. Martinez et al.   PLoS Genetics

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Modern Molecular Methods for Amphibian Conservation

(2009) Andrew Storfer et al.   BIOSCIENCE

Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library

(2009) Cecilia Sánchez et al.   BMC GENOMICS

Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery

(2009) Matthew C Hale et al.   BMC GENOMICS

Assessing statistical power of SNPs for population structure and conservation studies

(2009) PHILLIP A. MORIN et al.   Molecular Ecology Resources

High-resolution melting analysis (HRMA): a highly sensitive inexpensive genotyping alternative for population studies

(2009) B. L. SMITH et al.   Molecular Ecology Resources

Bringing Molecular Tools into Environmental Resource Management: Untangling the Molecules to Policy Pathway

(2009) Raphael Sagarin et al.   PLOS BIOLOGY

Evaluation of next generation sequencing platforms for population targeted sequencing studies

(2009) Olivier Harismendy et al.   GENOME BIOLOGY

A salmonid EST genomic study: genes, duplications, phylogeny and microarrays

(2008) Ben F Koop et al.   BMC GENOMICS

A centralized model for creating shared, standardized, microsatellite data that simplifies inter-laboratory collaboration

(2008) Jeff J. Stephenson et al.   CONSERVATION GENETICS

Integrating genetic data into management of marine resources: how can we do it better?

(2008) Robin S Waples et al.   FISH AND FISHERIES

Advances in molecular technology and their impact on fisheries genetics

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

Gene mapping in the wild with SNPs: guidelines and future directions

(2008) Jon Slate et al.   GENETICA

Quality scores and SNP detection in sequencing-by-synthesis systems

(2008) W. Brockman et al.   GENOME RESEARCH

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

Sequencing goes 454 and takes large-scale genomics into the wild

(2008) HANS ELLEGREN   MOLECULAR ECOLOGY

High resolution melting analysis of almond SNPs derived from ESTs

(2008) Shu-Biao Wu et al.   THEORETICAL AND APPLIED GENETICS

Number of Alleles as a Predictor of the Relative Assignment Accuracy of Short Tandem Repeat (STR) and Single-Nucleotide-Polymorphism (SNP) Baselines for Chum Salmon

(2008) Christian T. Smith et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Sequencing breakthroughs for genomic ecology and evolutionary biology

(2007) MATTHEW E. HUDSON   Molecular Ecology Resources

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources