Genome-wide annotation and characterization of CLAVATA/ESR (CLE) peptide hormones of soybean (Glycine max) and common bean (Phaseolus vulgaris), and their orthologues ofArabidopsis thaliana

Polypeptide signaling molecules in plant development

(2015) Etienne Grienenberger et al.   CURRENT OPINION IN PLANT BIOLOGY

O Cell, Where Art Thou? The mechanisms of shoot meristem patterning

(2015) Christophe Gaillochet et al.   CURRENT OPINION IN PLANT BIOLOGY

Reevaluation of the CLV3-receptor interaction in the shoot apical meristem: dissection of the CLV3 signaling pathway from a direct ligand-binding point of view

(2015) Hidefumi Shinohara et al.   PLANT JOURNAL

Posttranslationally Modified Small-Peptide Signals in Plants

(2014) Yoshikatsu Matsubayashi   Annual Review of Plant Biology

An RNA-Seq based gene expression atlas of the common bean

(2014) Jamie A O’Rourke et al.   BMC GENOMICS

Bioinformatic and phylogenetic analysis of the CLAVATA3/EMBRYO-SURROUNDING REGION (CLE) and the CLE-LIKE signal peptide genes in the Pinophyta

(2014) Timothy J Strabala et al.   BMC PLANT BIOLOGY

Endogenous peptide ligand–receptor systems for diverse signaling networks in plants

(2014) Satoshi Endo et al.   CURRENT OPINION IN PLANT BIOLOGY

Phytohormone Regulation of Legume-Rhizobia Interactions

(2014) Brett J. Ferguson et al.   JOURNAL OF CHEMICAL ECOLOGY

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

The soybean (Glycine max) nodulation-suppressive CLE peptide, GmRIC1, functions interspecifically in common white bean (Phaseolus vulgaris), but not in a supernodulating line mutated in the receptor PvNARK

(2014) Brett J. Ferguson et al.   PLANT BIOTECHNOLOGY JOURNAL

In Planta Processing and Glycosylation of a Nematode CLAVATA3/ENDOSPERM SURROUNDING REGION-Like Effector and Its Interaction with a Host CLAVATA2-Like Receptor to Promote Parasitism

(2014) Shiyan Chen et al.   PLANT PHYSIOLOGY

Nitrate inhibits soybean nodulation by regulating expression of CLE genes

(2014) Chae Woo Lim et al.   PLANT SCIENCE

Molecular genetic framework for protophloem formation

(2014) A. Rodriguez-Villalon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CLE-CLAVATA1 peptide-receptor signaling module regulates the expansion of plant root systems in a nitrogen-dependent manner

(2014) Takao Araya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Novel Pollen-Pistil Interaction Conferring High-Temperature Tolerance during Reproduction via CLE45 Signaling

(2013) Satoshi Endo et al.   CURRENT BIOLOGY

Structure–function analysis of the GmRIC1 signal peptide and CLE domain required for nodulation control in soybean

(2013) Dugald E. Reid et al.   JOURNAL OF EXPERIMENTAL BOTANY

Spatial expression of CLAVATA3 in the shoot apical meristem suggests it is not a stem cell marker in soybean

(2013) Chui E. Wong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nematode effector proteins: an emerging paradigm of parasitism

(2013) Melissa G. Mitchum et al.   NEW PHYTOLOGIST

Analysis Tool Web Services from the EMBL-EBI

(2013) Hamish McWilliam et al.   NUCLEIC ACIDS RESEARCH

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes

(2013) Takatomo Fujisawa et al.   NUCLEIC ACIDS RESEARCH

Antagonistic Peptide Technology for Functional Dissection of CLV3/ESR Genes in Arabidopsis

(2013) X.-F. Song et al.   PLANT PHYSIOLOGY

Suppression of Arabidopsis protophloem differentiation and root meristem growth by CLE45 requires the receptor-like kinase BAM3

(2013) S. Depuydt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root-derived CLE glycopeptides control nodulation by direct binding to HAR1 receptor kinase

(2013) Satoru Okamoto et al.   Nature Communications

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

A Putative Nuclear CLE-Like (CLEL) Peptide Precursor Regulates Root Growth in Arabidopsis

(2012) Ling Meng et al.   Molecular Plant

Chemical Synthesis of Arabidopsis CLV3 Glycopeptide Reveals the Impact of Hydroxyproline Arabinosylation on Peptide Conformation and Activity

(2012) Hidefumi Shinohara et al.   PLANT AND CELL PHYSIOLOGY

Regulation of Arabidopsis Embryo and Endosperm Development by the Polypeptide Signaling Molecule CLE8

(2012) E. Fiume et al.   PLANT CELL

Biochemical mapping of a ligand-binding domain within Arabidopsis BAM1 reveals diversified ligand recognition mechanisms of plant LRR-RKs

(2012) Hidefumi Shinohara et al.   PLANT JOURNAL

The fate of duplicated genes in a polyploid plant genome

(2012) Anne Roulin et al.   PLANT JOURNAL

Molecular mechanisms controlling legume autoregulation of nodulation

(2011) Dugald E. Reid et al.   ANNALS OF BOTANY

Search for nodulation-related CLE genes in the genome of Glycine max

(2011) Virginie Mortier et al.   JOURNAL OF EXPERIMENTAL BOTANY

Inoculation- and Nitrate-Induced CLE Peptides of Soybean Control NARK-Dependent Nodule Formation

(2011) Dugald E. Reid et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Soybean Nodule-Enhanced CLE Peptides in Roots Act as Signals in GmNARK-Mediated Nodulation Suppression

(2011) Chae Woo Lim et al.   PLANT AND CELL PHYSIOLOGY

Nodule numbers are governed by interaction between CLE peptides and cytokinin signaling

(2011) Virginie Mortier et al.   PLANT JOURNAL

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Establishment and maintenance of vascular cell communities through local signaling

(2010) Yuki Hirakawa et al.   CURRENT OPINION IN PLANT BIOLOGY

Molecular Analysis of Legume Nodule Development and Autoregulation

(2010) Brett J. Ferguson et al.   Journal of Integrative Plant Biology

Two CLE genes are induced by phosphate in roots of Lotus japonicus

(2010) Sachiko Funayama-Noguchi et al.   JOURNAL OF PLANT RESEARCH

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

A new bioinformatics analysis tools framework at EMBL-EBI

(2010) M. Goujon et al.   NUCLEIC ACIDS RESEARCH

Analogs of the CLV3 Peptide: Synthesis and Structure-Activity Relationships Focused on Proline Residues

(2010) T. Kondo et al.   PLANT AND CELL PHYSIOLOGY

Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region from Phaseolus vulgaris

(2010) J.-Y. Lin et al.   PLANT CELL

TDIF Peptide Signaling Regulates Vascular Stem Cell Proliferation via the WOX4 Homeobox Gene in Arabidopsis

(2010) Y. Hirakawa et al.   PLANT CELL

Nematode CLE signaling in Arabidopsis requires CLAVATA2 and CORYNE

(2010) Amy Replogle et al.   PLANT JOURNAL

Characterization of a CLE processing activity

(2010) Jun Ni et al.   PLANT MOLECULAR BIOLOGY

CLE Peptides Control Medicago truncatula Nodulation Locally and Systemically

(2010) V. Mortier et al.   PLANT PHYSIOLOGY

A Signaling Module Controlling the Stem Cell Niche in Arabidopsis Root Meristems

(2009) Yvonne Stahl et al.   CURRENT BIOLOGY

A glycopeptide regulating stem cell fate in Arabidopsis thaliana

(2009) Kentaro Ohyama et al.   Nature Chemical Biology

Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection

(2009) M. Libault et al.   PLANT PHYSIOLOGY

The association of homeobox gene expression with stem cell formation and morphogenesis in cultured Medicago truncatula

(2009) S.-K. Chen et al.   PLANTA

The WUS homeobox-containing (WOX) protein family

(2009) Eric van der Graaff et al.   GENOME BIOLOGY

Bioinformatic analysis of the CLE signaling peptide family

(2008) Karsten Oelkers et al.   BMC PLANT BIOLOGY

Nod Factor/Nitrate-Induced CLE Genes that Drive HAR1-Mediated Systemic Regulation of Nodulation

(2008) Satoru Okamoto et al.   PLANT AND CELL PHYSIOLOGY

Plant CLE peptides from two distinct functional classes synergistically induce division of vascular cells

(2008) R. Whitford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA