Suppression of Arabidopsis protophloem differentiation and root meristem growth by CLE45 requires the receptor-like kinase BAM3

OCTOPUS, a polarly localised membrane-associated protein, regulates phloem differentiation entry in Arabidopsis thaliana

(2012) E. Truernit et al.   DEVELOPMENT

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Context-Dependent Dual Role of SKI8 Homologs in mRNA Synthesis and Turnover

(2012) Eavan Dorcey et al.   PLoS Genetics

Peptide Signaling in Plant Development

(2011) Leron Katsir et al.   CURRENT BIOLOGY

Positional Information by Differential Endocytosis Splits Auxin Response to Drive Arabidopsis Root Meristem Growth

(2011) Luca Santuari et al.   CURRENT BIOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The PXY-CLE41 receptor ligand pair defines a multifunctional pathway that controls the rate and orientation of vascular cell division

(2010) J. P. Etchells et al.   DEVELOPMENT

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

CLE Peptides can Negatively Regulate Protoxylem Vessel Formation via Cytokinin Signaling

(2010) Yuki Kondo et al.   PLANT AND CELL PHYSIOLOGY

CLAVATA2 forms a distinct CLE-binding receptor complex regulating Arabidopsis stem cell specification

(2010) Yongfeng Guo et al.   PLANT JOURNAL

Comprehensive Analysis of CLE Polypeptide Signaling Gene Expression and Overexpression Activity in Arabidopsis

(2010) J. Jun et al.   PLANT PHYSIOLOGY

Spatio-temporal sequence of cross-regulatory events in root meristem growth

(2010) E. Scacchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays

(2010) Luca Santuari et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A Signaling Module Controlling the Stem Cell Niche in Arabidopsis Root Meristems

(2009) Yvonne Stahl et al.   CURRENT BIOLOGY

Dynamic, auxin-responsive plasma membrane-to-nucleus movement of Arabidopsis BRX

(2009) E. Scacchi et al.   DEVELOPMENT

Receptor-like kinases shape the plant

(2009) Ive De Smet et al.   NATURE CELL BIOLOGY

Plant peptides in signalling: looking for new partners

(2009) Melinka A. Butenko et al.   TRENDS IN PLANT SCIENCE

High-Resolution Whole-Mount Imaging of Three-Dimensional Tissue Organization and Gene Expression Enables the Study of Phloem Development and Structure in Arabidopsis

(2008) E. Truernit et al.   PLANT CELL

Plant CLE peptides from two distinct functional classes synergistically induce division of vascular cells

(2008) R. Whitford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system

(2008) Y. Hirakawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Receptor-Like Kinase ACR4 Restricts Formative Cell Divisions in the Arabidopsis Root

(2008) I. De Smet et al.   SCIENCE

Arabidopsis CLV3 Peptide Directly Binds CLV1 Ectodomain

(2008) M. Ogawa et al.   SCIENCE