Information theory applications for biological sequence analysis

Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis

(2012) Susana Vinga et al.   Algorithms for Molecular Biology

A novel hierarchical clustering algorithm for gene sequences

(2012) Dan Wei et al.   BMC BIOINFORMATICS

Capacity of DNA Data Embedding Under Substitution Mutations

(2012) Félix Balado   IEEE TRANSACTIONS ON INFORMATION THEORY

An information transmission model for transcription factor binding at regulatory DNA sites

(2012) Mingfeng Tan et al.   Theoretical Biology and Medical Modelling

Biology Needs Information Theory

(2012) Gérard Battail   Biosemiotics

SiTaR: a novel tool for transcription factor binding site prediction

(2011) Eugen Fazius et al.   BIOINFORMATICS

Topological entropy of DNA sequences

(2011) David Koslicki   BIOINFORMATICS

Information-theoretic approaches to SVM feature selection for metagenome read classification

(2011) Elaine Garbarine et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Entropy-based information gain approaches to detect and to characterize gene-gene and gene-environment interactions/correlations of complex diseases

(2011) R. Fan et al.   GENETIC EPIDEMIOLOGY

Beyond DNA: integrating inclusive inheritance into an extended theory of evolution

(2011) Étienne Danchin et al.   NATURE REVIEWS GENETICS

Shannon, Rényie and Tsallis entropy analysis of DNA using phase plane

(2011) J.A. Tenreiro Machado et al.   NONLINEAR ANALYSIS-REAL WORLD APPLICATIONS

Alternate measure of information useful for DNA sequences

(2011) Ranjan Bose et al.   PHYSICAL REVIEW E

A visual framework for sequence analysis using n-grams and spectral rearrangement

(2010) Stefan R. Maetschke et al.   BIOINFORMATICS

Graphical Representation of Proteins†

(2010) Milan Randić et al.   CHEMICAL REVIEWS

Biological Information as Set-Based Complexity

(2010) David J. Galas et al.   IEEE TRANSACTIONS ON INFORMATION THEORY

Introduction to the Special Issue on Information Theory in Molecular Biology and Neuroscience

(2010) Olgica Milenkovic et al.   IEEE TRANSACTIONS ON INFORMATION THEORY

The Minimum Entropy Mapping Spectrum of a DNA Sequence

(2010) Lorenzo Galleani et al.   IEEE TRANSACTIONS ON INFORMATION THEORY

Heredity as an Encoded Communication Process

(2010) Gérard Battail   IEEE TRANSACTIONS ON INFORMATION THEORY

Computational Detection of Transcription Factor Binding Sites Through Differential Rényi Entropy

(2010) Joan Maynou et al.   IEEE TRANSACTIONS ON INFORMATION THEORY

Analysis of Similarity/Dissimilarity of DNA Sequences Based on Convolutional Code Model

(2010) Xiao Liu et al.   NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS

Scaling properties and fractality in the distribution of coding segments in eukaryotic genomes revealed through a block entropy approach

(2010) Labrini Athanasopoulou et al.   PHYSICAL REVIEW E

A Novel Alignment-Free Method for Comparing Transcription Factor Binding Site Motifs

(2010) Minli Xu et al.   PLoS One

Co-evolution and information signals in biological sequences

(2010) A. Carbone et al.   THEORETICAL COMPUTER SCIENCE

Genome analysis with inter-nucleotide distances

(2009) V. Afreixo et al.   BIOINFORMATICS

Textual data compression in computational biology: a synopsis

(2009) R. Giancarlo et al.   BIOINFORMATICS

Entropy decrease associated to solute compartmentalization in the cell

(2009) Dolores Marín et al.   BIOSYSTEMS

Biological sequences as pictures – a generic two dimensional solution for iterated maps

(2009) Jonas S Almeida et al.   BMC BIOINFORMATICS

A reexamination of information theory-based methods for DNA-binding site identification

(2009) Ivan Erill et al.   BMC BIOINFORMATICS

Information-Theoretic Model of Evolution over Protein Communication Channel

(2009) Liuling Gong et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Entropy estimation of very short symbolic sequences

(2009) Annick Lesne et al.   PHYSICAL REVIEW E

Quantum mechanical model for information transfer from DNA to protein

(2008) Ioannis G. Karafyllidis   BIOSYSTEMS

The Average Mutual Information Profile as a Genomic Signature

(2008) Mark Bauer et al.   BMC BIOINFORMATICS

Sequence space coverage, entropy of genomes and the potential to detect non-human DNA in human samples

(2008) Zhandong Liu et al.   BMC GENOMICS

Application of information-theoretic tests for the analysis of DNA sequences based on Markov chain models

(2008) N. Usotskaya et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

DNA Binding Site Characterization by Means of RÉnyi Entropy Measures on Nucleotide Transitions

(2008) Alexandre Perera et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

On some entropy functionals derived from Rényi information divergence

(2008) J.-F. Bercher   INFORMATION SCIENCES

Entropy analysis in yeast DNA

(2007) Jongkwang Kim et al.   CHAOS SOLITONS & FRACTALS

The performances of the chi-square test and complexity measures for signal recognition in biological sequences

(2007) Leila Pirhaji et al.   JOURNAL OF THEORETICAL BIOLOGY