Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis

Efficient alignment of pyrosequencing reads for re-sequencing applications

(2011) Francisco Fernandes et al.   BMC BIOINFORMATICS

The human genome: a multifractal analysis

(2011) Pedro A Moreno et al.   BMC GENOMICS

Using genomic signatures for HIV-1 sub-typing

(2010) Aridaman Pandit et al.   BMC BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Biological sequences as pictures – a generic two dimensional solution for iterated maps

(2009) Jonas S Almeida et al.   BMC BIOINFORMATICS

Chaos game representation of human pallidal spike trains

(2009) Mahta Rasouli et al.   JOURNAL OF BIOLOGICAL PHYSICS

Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability

(2009) M. D. Vinces et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Exploring an alignment free approach for protein classification and structural class prediction

(2007) P. Deschavanne et al.   BIOCHIMIE