Hierarchy of non-glucose sugars in Escherichia coli

Coordination of microbial metabolism

(2014) Victor Chubukov et al.   NATURE REVIEWS MICROBIOLOGY

Different Levels of Catabolite Repression Optimize Growth in Stable and Variable Environments

(2014) Aaron M. New et al.   PLOS BIOLOGY

Linear Superposition and Prediction of Bacterial Promoter Activity Dynamics in Complex Conditions

(2014) Daphna Rothschild et al.   PLoS Computational Biology

Memory and Fitness Optimization of Bacteria under Fluctuating Environments

(2014) Guillaume Lambert et al.   PLoS Genetics

Regulation of Bacterial Metabolism by Small RNAs Using Diverse Mechanisms

(2013) Maksym Bobrovskyy et al.   Annual Review of Genetics

Promoter activity dynamics in the lag phase of Escherichia coli

(2013) Daniel Madar et al.   BMC Systems Biology

Involvement of the ribose operon repressor RbsR in regulation of purine nucleotide synthesis inEscherichia coli

(2013) Tomohiro Shimada et al.   FEMS MICROBIOLOGY LETTERS

Promoters maintain their relative activity levels under different growth conditions

(2013) L. Keren et al.   Molecular Systems Biology

Dissecting specific and global transcriptional regulation of bacterial gene expression

(2013) L. Gerosa et al.   Molecular Systems Biology

Shared control of gene expression in bacteria by transcription factors and global physiology of the cell

(2013) S. Berthoumieux et al.   Molecular Systems Biology

Coordination of bacterial proteome with metabolism by cyclic AMP signalling

(2013) Conghui You et al.   NATURE

The geometry of the Pareto front in biological phenotype space

(2013) Hila Sheftel et al.   Ecology and Evolution

Evolutionary Tradeoffs between Economy and Effectiveness in Biological Homeostasis Systems

(2013) Pablo Szekely et al.   PLoS Computational Biology

Simultaneous utilization of glucose, xylose and arabinose in the presence of acetate by a consortium of Escherichia coli strains

(2012) Tian Xia et al.   Microbial Cell Factories

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

(2012) Heladia Salgado et al.   NUCLEIC ACIDS RESEARCH

EcoCyc: fusing model organism databases with systems biology

(2012) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Evolutionary Trade-Offs, Pareto Optimality, and the Geometry of Phenotype Space

(2012) O. Shoval et al.   SCIENCE

Multidimensional Optimality of Microbial Metabolism

(2012) R. Schuetz et al.   SCIENCE

Cost-Benefit Tradeoffs in Engineered lac Operons

(2012) M. Eames et al.   SCIENCE

Optimality and evolution of transcriptionally regulated gene expression

(2011) Frank J Poelwijk et al.   BMC Systems Biology

The Base-Pairing RNA Spot 42 Participates in a Multioutput Feedforward Loop to Help Enact Catabolite Repression in Escherichia coli

(2011) Chase L. Beisel et al.   MOLECULAR CELL

α-ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition

(2011) Christopher D Doucette et al.   Nature Chemical Biology

Novel Roles of cAMP Receptor Protein (CRP) in Regulation of Transport and Metabolism of Carbon Sources

(2011) Tomohiro Shimada et al.   PLoS One

Escherichia coli Exports Cyclic AMP via TolC

(2010) K. Hantke et al.   JOURNAL OF BACTERIOLOGY

Cost of Unneeded Proteins in E. coli Is Reduced after Several Generations in Exponential Growth

(2010) Irit Shachrai et al.   MOLECULAR CELL

Regulation of Arabinose and Xylose Metabolism in Escherichia coli

(2009) T. A. Desai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nonoptimal Microbial Response to Antibiotics Underlies Suppressive Drug Interactions

(2009) Tobias Bollenbach et al.   CELL

Quantitative effect and regulatory function of cyclic adenosine 5′-phosphate in Escherichia coli

(2009) Atul Narang   JOURNAL OF BIOSCIENCES

Adaptive prediction of environmental changes by microorganisms

(2009) Amir Mitchell et al.   NATURE

DEFINED ORDER OF EVOLUTIONARY ADAPTATIONS: EXPERIMENTAL EVIDENCE

(2008) Erez Oxman et al.   EVOLUTION

Comparison of Carbon Nutrition for Pathogenic and Commensal Escherichia coli Strains in the Mouse Intestine

(2008) A. J. Fabich et al.   INFECTION AND IMMUNITY

Diverse Two-Dimensional Input Functions Control Bacterial Sugar Genes

(2008) Shai Kaplan et al.   MOLECULAR CELL

Carbon catabolite repression in bacteria: many ways to make the most out of nutrients

(2008) Boris Görke et al.   NATURE REVIEWS MICROBIOLOGY

Predictive Behavior Within Microbial Genetic Networks

(2008) I. Tagkopoulos et al.   SCIENCE