Linear Superposition and Prediction of Bacterial Promoter Activity Dynamics in Complex Conditions

The last generation of bacterial growth in limiting nutrient

(2013) Anat Bren et al.   BMC Systems Biology

Dissecting specific and global transcriptional regulation of bacterial gene expression

(2013) L. Gerosa et al.   Molecular Systems Biology

Shared control of gene expression in bacteria by transcription factors and global physiology of the cell

(2013) S. Berthoumieux et al.   Molecular Systems Biology

Single-Cell Dynamics Reveals Sustained Growth during Diauxic Shifts

(2013) Sarah Boulineau et al.   PLoS One

The geometry of the Pareto front in biological phenotype space

(2013) Hila Sheftel et al.   Ecology and Evolution

Evolutionary Tradeoffs between Economy and Effectiveness in Biological Homeostasis Systems

(2013) Pablo Szekely et al.   PLoS Computational Biology

Mode of Regulation and the Insulation of Bacterial Gene Expression

(2012) Vered Sasson et al.   MOLECULAR CELL

Principal-Oscillation-Pattern Analysis of Gene Expression

(2012) Daifeng Wang et al.   PLoS One

Evolutionary Trade-Offs, Pareto Optimality, and the Geometry of Phenotype Space

(2012) O. Shoval et al.   SCIENCE

Multidimensional Optimality of Microbial Metabolism

(2012) R. Schuetz et al.   SCIENCE

Resolution of Gene Regulatory Conflicts Caused by Combinations of Antibiotics

(2011) Tobias Bollenbach et al.   MOLECULAR CELL

Structure and Evolution of Streptomyces Interaction Networks in Soil and In Silico

(2011) Kalin Vetsigian et al.   PLOS BIOLOGY

Protein Dynamics in Drug Combinations: a Linear Superposition of Individual-Drug Responses

(2010) Naama Geva-Zatorsky et al.   CELL

Regulation of Arabinose and Xylose Metabolism in Escherichia coli

(2009) T. A. Desai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Growth Rate-Dependent Global Effects on Gene Expression in Bacteria

(2009) Stefan Klumpp et al.   CELL

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

(2009) Bryson D Bennett et al.   Nature Chemical Biology

Principal components analysis based methodology to identify differentially expressed genes in time-course microarray data

(2008) Sudhakar Jonnalagadda et al.   BMC BIOINFORMATICS

The incoherent feed-forward loop can generate non-monotonic input functions for genes

(2008) Shai Kaplan et al.   Molecular Systems Biology