Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique

Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032

(2013) Almut Mentz et al.   BMC GENOMICS

Histidine biosynthesis, its regulation and biotechnological application inCorynebacterium glutamicum

(2013) Robert K. Kulis-Horn et al.   Microbial Biotechnology

Annotation of the Transcriptome from Taenia pisiformis and Its Comparative Analysis with Three Taeniidae Species

(2012) Deying Yang et al.   PLoS One

Corynebacterium glutamicum as a potent biocatalyst for the bioconversion of pentose sugars to value-added products

(2011) Vipin Gopinath et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

(2011) Jochen Blom et al.   BIOINFORMATICS

Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics

(2011) Sarah Frank et al.   ENVIRONMENTAL MICROBIOLOGY

Archaeal transcriptional regulation of the prokaryotic KdpFABC complex mediating K+ uptake in H. salinarum

(2011) Dorthe Kixmüller et al.   EXTREMOPHILES

Review Application of RNA-seq to reveal the transcript profile in bacteria

(2011) A.C. Pinto et al.   GENETICS AND MOLECULAR RESEARCH

Genome-wide detection of novel regulatory RNAs in E. coli

(2011) R. Raghavan et al.   GENOME RESEARCH

Comprehensive Transcriptome Analysis of the Periodontopathogenic Bacterium Porphyromonas gingivalis W83

(2011) H. Hovik et al.   JOURNAL OF BACTERIOLOGY

Sigma factors and promoters in Corynebacterium glutamicum

(2011) Miroslav Pátek et al.   JOURNAL OF BIOTECHNOLOGY

Bacterial transcriptomics: what is beyond the RNA horiz-ome?

(2011) Marc Güell et al.   NATURE REVIEWS MICROBIOLOGY

CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands

(2011) J. Pauling et al.   NUCLEIC ACIDS RESEARCH

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

(2011) S. Powell et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing-based identification of small non-coding RNAs inStreptomyces coelicolor

(2011) Michael-Paul Vockenhuber et al.   RNA Biology

Bacterial Antisense RNAs: How Many Are There, and What Are They Doing?

(2010) Maureen Kiley Thomason et al.   Annual Review of Genetics

Translation initiation: variations in the mechanism can be anticipated

(2010) Naglis Malys et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Structural and operational complexity of the Geobacter sulfurreducens genome

(2010) Y. Qiu et al.   GENOME RESEARCH

The cspA mRNA Is a Thermosensor that Modulates Translation of the Cold-Shock Protein CspA

(2010) Anna Maria Giuliodori et al.   MOLECULAR CELL

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay

(2010) Joel G. Belasco   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Rfam: Wikipedia, clans and the "decimal" release

(2010) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs

(2009) Haley F Oliver et al.   BMC GENOMICS

Operons

(2009) Anne E. Osbourn et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Activation of gene expression by small RNA

(2009) Kathrin S. Fröhlich et al.   CURRENT OPINION IN MICROBIOLOGY

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

(2009) L. W. Hillier et al.   GENOME RESEARCH

A single-base resolution map of an archaeal transcriptome

(2009) O. Wurtzel et al.   GENOME RESEARCH

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

Structure and Complexity of a Bacterial Transcriptome

(2009) K. D. Passalacqua et al.   JOURNAL OF BACTERIOLOGY

Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability

(2009) D. Jager et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptome Complexity in a Genome-Reduced Bacterium

(2009) M. Guell et al.   SCIENCE

A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi

(2009) Timothy T. Perkins et al.   PLoS Genetics

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

Stem cell transcriptome profiling via massive-scale mRNA sequencing

(2008) Nicole Cloonan et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5'-terminal AUG

(2008) J. E. Brock et al.   RNA

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE

Annotating genomes with massive-scale RNA sequencing

(2008) France Denoeud et al.   GENOME BIOLOGY