Rfam: Wikipedia, clans and the "decimal" release

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Bcheck: a wrapper tool for detecting RNase P RNA genes

(2010) Dilmurat Yusuf et al.   BMC GENOMICS

The cspA mRNA Is a Thermosensor that Modulates Translation of the Cold-Shock Protein CspA

(2010) Anna Maria Giuliodori et al.   MOLECULAR CELL

The Yfr2 ncRNA family, a group of abundant RNA molecules widely conserved in cyanobacteria

(2010) Gregor Gierga et al.   RNA Biology

Conserved and variable domains of RNase MRP RNA

(2010) Marcela Dávila López et al.   RNA Biology

Families of H/ACA ncRNA molecules in Trypanosomatids

(2010) Tirza Doniger et al.   RNA Biology

A survey of nematode SmY RNAs

(2010) Thomas A. Jones et al.   RNA Biology

Kinship in the SRP RNA family

(2010) Magnus Alm Rosenblad et al.   RNA Biology

Comparative analysis of eukaryotic U3 snoRNA

(2010) Manja Marz et al.   RNA Biology

The RNase P family

(2010) J. Christopher Ellis et al.   RNA Biology

Group I introns: Moving in new directions

(2010) Henrik Nielsen et al.   RNA Biology

Variations on the tmRNA gene

(2010) Chunhong Mao et al.   RNA Biology

RsaOG, a new Staphylococcal family of highly transcribed non-coding RNA

(2010) Antonin Marchais et al.   RNA Biology

A novel family of plasmid-transferred anti-sense ncRNAs

(2010) Sven Findeiß et al.   RNA Biology

A family of non-classical pseudoknots in influenza A and B viruses

(2010) Alexander P. Gultyaev et al.   RNA Biology

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

(2010) Zasha Weinberg et al.   GENOME BIOLOGY

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

A pH-responsive riboregulator

(2009) Gal Nechooshtan et al.   GENES & DEVELOPMENT

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

(2009)   JOURNAL OF HEREDITY

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

The Gene Wiki: community intelligence applied to human gene annotation

(2009) Jon W. Huss et al.   NUCLEIC ACIDS RESEARCH

Improvements to services at the European Nucleotide Archive

(2009) Rasko Leinonen et al.   NUCLEIC ACIDS RESEARCH

The RNA structure alignment ontology

(2009) J. W. Brown et al.   RNA

Profile Comparer: a program for scoring and aligning profile hidden Markov models

(2008) M. Madera   BIOINFORMATICS

Small Toxic Proteins and the Antisense RNAs That Repress Them

(2008) E. M. Fozo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs

(2008) T. Mituyama et al.   NUCLEIC ACIDS RESEARCH

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

A Gene Wiki for Community Annotation of Gene Function

(2008) Jon W Huss et al.   PLOS BIOLOGY

Two Seemingly Homologous Noncoding RNAs Act Hierarchically to Activate glmS mRNA Translation

(2008) Johannes H Urban et al.   PLOS BIOLOGY

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

(2008) Sean R. Eddy   PLoS Computational Biology