CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands

Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study

(2011) Louise Teixeira Cerdeira et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Comprehensive cluster analysis with Transitivity Clustering

(2011) Tobias Wittkop et al.   Nature Protocols

Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in Two Corynebacterium pseudotuberculosis Strains

(2011) Jerônimo C. Ruiz et al.   PLoS One

On the power and limits of evolutionary conservation—unraveling bacterial gene regulatory networks

(2010) Jan Baumbach   NUCLEIC ACIDS RESEARCH

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

(2010) S. Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms

(2009) Jan Baumbach et al.   BMC Systems Biology

Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet

(2009) Jan Baumbach et al.   Nature Protocols

From Corynebacterium glutamicum to Mycobacterium tuberculosis--towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet

(2009) J. Krawczyk et al.   NUCLEIC ACIDS RESEARCH

MicrobesOnline: an integrated portal for comparative and functional genomics

(2009) P. S. Dehal et al.   NUCLEIC ACIDS RESEARCH

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes

(2008) A. Grote et al.   NUCLEIC ACIDS RESEARCH