On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation
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Title
On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation
Authors
Keywords
Phylogenetics, Reconciliation, Gene trees, Horizontal gene transfer, Microbial evolution
Journal
BMC BIOINFORMATICS
Volume 19, Issue S9, Pages 105-115
Publisher
Springer Nature America, Inc
Online
2018-08-13
DOI
10.1186/s12859-018-2269-0
References
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Related references
Note: Only part of the references are listed.- ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony: Table 1.
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- Unrooted Tree Reconciliation: A Unified Approach
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- Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss
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- Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss
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- REPRESENTING A SET OF RECONCILIATIONS IN A COMPACT WAY
- (2012) CELINE SCORNAVACCA et al. Journal of Bioinformatics and Computational Biology
- Simultaneous Identification of Duplications and Lateral Gene Transfers
- (2010) A Tofigh et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- The Cophylogeny Reconstruction Problem Is NP-Complete
- (2010) Y. Ovadia et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Rapid evolutionary innovation during an Archaean genetic expansion
- (2010) Lawrence A. David et al. NATURE
- On the Computational Complexity of the Reticulate Cophylogeny Reconstruction Problem
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