Unrooted Tree Reconciliation: A Unified Approach

Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem

(2012) Pawel Górecki et al.   BMC BIOINFORMATICS

Root location in random trees: A polarity property of all sampling consistent phylogenetic models except one

(2012) Mike Steel   MOLECULAR PHYLOGENETICS AND EVOLUTION

TreeFix: Statistically Informed Gene Tree Error Correction Using Species Trees

(2012) Yi-Chieh Wu et al.   SYSTEMATIC BIOLOGY

From Gene Trees to Species Trees II: Species Tree Inference by Minimizing Deep Coalescence Events

(2011) Louxin Zhang   IEEE-ACM Transactions on Computational Biology and Bioinformatics

iGTP: A software package for large-scale gene tree parsimony analysis

(2010) Ruchi Chaudhary et al.   BMC BIOINFORMATICS

A Note on the Fixed Parameter Tractability of the Gene-Duplication Problem

(2010) Mukul S Bansal et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction

(2010) M. D. Rasmussen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-Scale Phylogenetics: Inferring the Plant Tree of Life from 18,896 Gene Trees

(2010) J. Gordon Burleigh et al.   SYSTEMATIC BIOLOGY

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

(2008) A. Wehe et al.   BIOINFORMATICS

Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes

(2008) David J. Sherman et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH