A Bayesian Method for Analyzing Lateral Gene Transfer

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss

(2012) Mukul S. Bansal et al.   BIOINFORMATICS

Lateral gene transfer as a support for the tree of life

(2012) S. S. Abby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biased gene transfer in microbial evolution

(2011) Cheryl P. Andam et al.   NATURE REVIEWS MICROBIOLOGY

The CO2-concentrating mechanism of Synechococcus WH5701 is composed of native and horizontally-acquired components

(2011) Benjamin D. Rae et al.   PHOTOSYNTHESIS RESEARCH

Evaluation of Bayesian Models of Substitution Rate Evolution—Parental Guidance versus Mutual Independence

(2011) Martin Linder et al.   SYSTEMATIC BIOLOGY

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests

(2010) Sophie S Abby et al.   BMC BIOINFORMATICS

SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees

(2010) Tobias Hill et al.   BMC EVOLUTIONARY BIOLOGY

Signature proteins for the major clades of Cyanobacteria

(2010) Radhey S Gupta et al.   BMC EVOLUTIONARY BIOLOGY

Simultaneous Identification of Duplications and Lateral Gene Transfers

(2010) A Tofigh et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction

(2010) M. D. Rasmussen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid evolutionary innovation during an Archaean genetic expansion

(2010) Lawrence A. David et al.   NATURE

Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

(2009) O. Akerborg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Horizontal gene transfer in evolution: facts and challenges

(2009) L. Boto   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Probabilistic Orthology Analysis

(2009) Bengt Sennblad et al.   SYSTEMATIC BIOLOGY

Unifying Vertical and Nonvertical Evolution: A Stochastic ARG-based Framework

(2009) Erik W. Bloomquist et al.   SYSTEMATIC BIOLOGY

How to become a parasite – lessons from the genomes of nematodes

(2009) Christoph Dieterich et al.   TRENDS IN GENETICS

Why do bacteria engage in homologous recombination?

(2009) Michiel Vos   TRENDS IN MICROBIOLOGY

Birth-death prior on phylogeny and speed dating

(2008) Orjan Akerborg et al.   BMC EVOLUTIONARY BIOLOGY

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS

Genome evolution in cyanobacteria: The stable core and the variable shell

(2008) T. Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA