Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations

Lateral gene transfer as a support for the tree of life

(2012) S. S. Abby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Early-Branching Microbialite Cyanobacterium Forms Intracellular Carbonates

(2012) E. Couradeau et al.   SCIENCE

The origin of multicellularity in cyanobacteria

(2011) Bettina E Schirrmeister et al.   BMC EVOLUTIONARY BIOLOGY

Large-Scale Phylogenomic Analyses Indicate a Deep Origin of Primary Plastids within Cyanobacteria

(2011) Alexis Criscuolo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sea change for the rise of oxygen

(2011) Timothy W. Lyons et al.   NATURE

Ecology drives a global network of gene exchange connecting the human microbiome

(2011) Chris S. Smillie et al.   NATURE

Atmospheric oxygenation caused by a change in volcanic degassing pressure

(2011) Fabrice Gaillard et al.   NATURE

Microaerobic steroid biosynthesis and the molecular fossil record of Archean life

(2011) J. R. Waldbauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests

(2010) Sophie S Abby et al.   BMC BIOINFORMATICS

Dating the cyanobacterial ancestor of the chloroplast

(2010) Luisa I Falcón et al.   ISME Journal

Rapid evolutionary innovation during an Archaean genetic expansion

(2010) Lawrence A. David et al.   NATURE

Timing of morphological and ecological innovations in the cyanobacteria – a key to understanding the rise in atmospheric oxygen

(2009) C. E. BLANK et al.   Geobiology

Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

(2009) O. Akerborg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomes as documents of evolutionary history

(2009) Bastien Boussau et al.   TRENDS IN ECOLOGY & EVOLUTION

Integrating Markov Clustering and Molecular Phylogenetics to Reconstruct the Cyanobacterial Species Tree from Conserved Protein Families

(2008) W. D. Swingley et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dealing with incongruence in phylogenomic analyses

(2008) N. Galtier et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Impact of Reticulate Evolution on Genome Phylogeny

(2008) Robert G. Beiko et al.   SYSTEMATIC BIOLOGY