Transcriptome analysis of Enterococcus faecalis toward its adaption to surviving in the mouse intestinal tract

Comparative Analysis of Lactobacillus plantarum WCFS1 Transcriptomes by Using DNA Microarray and Next-Generation Sequencing Technologies

(2012) Milkha M. Leimena et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Mechanism Analysis of Acid Tolerance Response of Bifidobacterium longum subsp. longum BBMN 68 by Gene Expression Profile Using RNA-Sequencing

(2012) Junhua Jin et al.   PLoS One

Identification of proteins related to the stress response in Enterococcus faecalis V583 caused by bovine bile

(2012) Liv B�hle et al.   Proteome Science

Transcriptomes of Frankia sp. strain CcI3 in growth transitions

(2011) Derek M Bickhart et al.   BMC MICROBIOLOGY

Chronic Intestinal Inflammation Induces Stress-Response Genes in Commensal Escherichia coli

(2011) Laura G. Patwa et al.   GASTROENTEROLOGY

Enterococcus faecalis Metalloprotease Compromises Epithelial Barrier and Contributes to Intestinal Inflammation

(2011) Natalie Steck et al.   GASTROENTEROLOGY

Comparison of genotypic and phenotypic cluster analyses of virulence determinants and possible role of CRISPR elements towards their incidence in Enterococcus faecalis and Enterococcus faecium

(2011) Angela G. Lindenstrauß et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Class IIa bacteriocin resistance in Enterococcus faecalis V583: The mannose PTS operon mediates global transcriptional responses

(2010) Mona Opsata et al.   BMC MICROBIOLOGY

Enterococcus populations in artisanal Manchego cheese: Biodiversity, technological and safety aspects

(2010) Pedro Nieto-Arribas et al.   FOOD MICROBIOLOGY

Comparative Genomic Analysis of Pathogenic and Probiotic Enterococcus faecalis Isolates, and Their Transcriptional Responses to Growth in Human Urine

(2010) Heidi C. Vebø et al.   PLoS One

Screening of In Vivo Activated Genes in Enterococcus faecalis during Insect and Mouse Infections and Growth in Urine

(2010) Aurelie Hanin et al.   PLoS One

The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions

(2010) M. E. V. Johansson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

An Efficient RNA Extraction Method for Estimating Gut Microbial Diversity by Polymerase Chain Reaction

(2009) Seungha Kang et al.   CURRENT MICROBIOLOGY

Glycerol Is Metabolized in a Complex and Strain-Dependent Manner in Enterococcus faecalis

(2009) A. Bizzini et al.   JOURNAL OF BACTERIOLOGY

The Transcriptome of the Nosocomial Pathogen Enterococcus faecalis V583 Reveals Adaptive Responses to Growth in Blood

(2009) Heidi C. Vebø et al.   PLoS One

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Identification of Genes Associated with the Long-Gut-Persistence Phenotype of the Probiotic Lactobacillus johnsonii Strain NCC533 Using a Combination of Genomics and Transcriptome Analysis

(2008) E. Denou et al.   JOURNAL OF BACTERIOLOGY

Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF

(2008) Agathe Bourgogne et al.   GENOME BIOLOGY