Metatranscriptomic census of active protists in soils

Genetic analysis among environmental strains of Balamuthia mandrillaris recovered from an artificial lagoon and from soil in Sonora, Mexico

(2014) Luis Fernando Lares-Jiménez et al.   EXPERIMENTAL PARASITOLOGY

Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach

(2014) Guillaume Lentendu et al.   MOLECULAR ECOLOGY

Soil is the origin for the presence of Naegleria fowleri in the thermal recreational waters

(2014) Mirna Moussa et al.   PARASITOLOGY RESEARCH

Acanthamoeba everywhere: high diversity of Acanthamoeba in soils

(2014) Stefan Geisen et al.   PARASITOLOGY RESEARCH

Soil water availability strongly alters the community composition of soil protists

(2014) Geisen Stefan et al.   PEDOBIOLOGIA

Discrepancy between Species Borders at Morphological and Molecular Levels in the Genus Cochliopodium (Amoebozoa, Himatismenida), with the Description of Cochliopodium plurinucleolum n. sp.

(2014) Stefan Geisen et al.   PROTIST

Assimilation of Cellulose-Derived Carbon by Microeukaryotes in Oxic and Anoxic Slurries of an Aerated Soil

(2013) Antonis Chatzinotas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics

(2013) Tim Urich et al.   ENVIRONMENTAL MICROBIOLOGY

A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology

(2013) Thorsten Stoeck et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic interpretations and ecological potentials of the Mesomycetozoea (Ichthyosporea)

(2013) Sally L. Glockling et al.   Fungal Ecology

Below-ground fine-scale distribution and soil versus fine root detection of fungal and soil oomycete communities in a French beech forest

(2013) Aurore Coince et al.   Fungal Ecology

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

(2013) Thomas R Turner et al.   ISME Journal

Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils

(2013) Darren S. Baldwin et al.   MOLECULAR ECOLOGY

Can Abundance of Protists Be Inferred from Sequence Data: A Case Study of Foraminifera

(2013) Alexandra A-T. Weber et al.   PLoS One

Multigene Phylogenetic Reconstruction of the Tubulinea (Amoebozoa) Corroborates Four of the Six Major Lineages, while Additionally Revealing that Shell Composition Does not Predict Phylogeny in the Arcellinida

(2013) Daniel J.G. Lahr et al.   PROTIST

Extremely High Copy Numbers and Polymorphisms of the rDNA Operon Estimated from Single Cell Analysis of Oligotrich and Peritrich Ciliates

(2013) Jun Gong et al.   PROTIST

Amplification primers of SSU rDNA for soil protists

(2013) Sina M. Adl et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

(2012) Regina Radax et al.   ENVIRONMENTAL MICROBIOLOGY

Knowledge of morphology is still required when identifying new amoeba isolates by molecular techniques

(2012) Johan F. De Jonckheere et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Cryptic diversity within the choanoflagellate morphospecies complex Codosiga botrytis – Phylogeny and morphology of ancient and modern isolates

(2012) Daniel Stoupin et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study

(2012) Charles Bachy et al.   ISME Journal

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms

(2012) Alexander Tveit et al.   ISME Journal

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

On a Cercopithifilaria sp. transmitted by Rhipicephalus sanguineus: a neglected, but widespread filarioid of dogs

(2012) Domenico Otranto et al.   Parasites & Vectors

Identification and Detection ofPhytophthora: Reviewing Our Progress, Identifying Our Needs

(2012) Frank N. Martin et al.   PLANT DISEASE

CREST – Classification Resources for Environmental Sequence Tags

(2012) Anders Lanzén et al.   PLoS One

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing

(2011) Sébastien Monchy et al.   ENVIRONMENTAL MICROBIOLOGY

Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA

(2011) Anders Lanzén et al.   FEMS MICROBIOLOGY ECOLOGY

A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa)

(2011) Alexey V. Smirnov et al.   PROTIST

Molecular evidence for widespread occurrence of Foraminifera in soils

(2010) Franck Lejzerowicz et al.   ENVIRONMENTAL MICROBIOLOGY

Invalidation ofHyperamoebaby Transferring its Species to Other Genera of Myxogastria

(2010) ANNA MARIA FIORE-DONNO et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

(2010) RALPH MEDINGER et al.   MOLECULAR ECOLOGY

Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil

(2010) Christina Kaiser et al.   NEW PHYTOLOGIST

Highly Diverse and Seasonally Dynamic Protist Community in a Pristine Peat Bog

(2010) Enrique Lara et al.   PROTIST

Polymerase chain reaction primers miss half of rRNA microbial diversity

(2009) SunHee Hong et al.   ISME Journal

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Phylogeny, Taxonomy, and Astounding Genetic Diversity of Glissomonadida ord. nov., The Dominant Gliding Zooflagellates in Soil (Protozoa: Cercozoa)

(2009) Alexis T. Howe et al.   PROTIST

The Life History of Flabellula baltica Smirnov (Gymnamoebae, Rhizopoda): Adaptations to a Spatially and Temporally Heterogeneous Environment

(2009) Tom Fenchel   PROTIST

Environmental rRNA inventories miss over half of protistan diversity

(2008) Sunok Jeon et al.   BMC MICROBIOLOGY

Elevated atmospheric CO2affects soil microbial diversity associated with trembling aspen

(2008) Celine Lesaulnier et al.   ENVIRONMENTAL MICROBIOLOGY

Genetic Diversity of Eukaryotic Microorganisms in Lake Taihu, a Large Shallow Subtropical Lake in China

(2008) Meijun Chen et al.   MICROBIAL ECOLOGY

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One

Correct identification of species makes the amoebozoan rRNA tree congruent with morphology for the order Leptomyxida Page 1987; with description of Acramoeba dendroida n. g., n. sp., originally misidentified as ‘Gephyramoeba sp.’

(2007) Alexey V. Smirnov et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

New insights into animal pathogenic oomycetes

(2007) Andrew J. Phillips et al.   TRENDS IN MICROBIOLOGY