Identification and Functional Analysis of Long Intergenic Non-coding RNAs Underlying Intramuscular Fat Content in Pigs

Identification of genes related to intramuscular fat content of pigs using genome-wide association study

(2018) Sohyoung Won et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

miR-130a regulates differential lipid accumulation between intramuscular and subcutaneous adipose tissues of pigs via suppressing PPARG expression

(2017) Wei Wei et al.   GENE

Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain

(2017) Siling Liu et al.   GENOME RESEARCH

Comparative analyses of long non-coding RNA in lean and obese pigs

(2017) Lin Yu et al.   Oncotarget

Transcriptome analysis reveals long intergenic non-coding RNAs involved in skeletal muscle growth and development in pig

(2017) Cheng Zou et al.   Scientific Reports

Systematic Identification and Molecular Characteristics of Long Noncoding RNAs in Pig Tissues

(2017) Yalan Yang et al.   Biomed Research International

Transcriptome Analysis Reveals Long Intergenic Noncoding RNAs Contributed to Growth and Meat Quality Differences between Yorkshire and Wannanhua Pig

(2017) Cheng Zou et al.   Genes

Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa

(2017) Zhonglin Tang et al.   Scientific Reports

Comparative analysis of DNA methylome and transcriptome of skeletal muscle in lean-, obese- and mini-type pigs

(2017) Yalan Yang et al.   Scientific Reports

Discovery of porcine miRNA-196a/b may influence porcine adipogenesis in longissimus dorsi muscle by miRNA sequencing

(2016) Linqing Liu et al.   ANIMAL GENETICS

Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori

(2016) Yuqian Wu et al.   PLoS One

Identification and functional analysis of long intergenic noncoding RNA genes in porcine pre-implantation embryonic development

(2016) Jingyu Li et al.   Scientific Reports

PU.1antisense lncRNA against its mRNA translation promotes adipogenesis in porcine preadipocytes

(2015) N. Wei et al.   ANIMAL GENETICS

Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

(2015) Kyle M. Schachtschneider et al.   BMC GENOMICS

Fibroblast Growth Factor 21 Suppresses Adipogenesis in Pig Intramuscular Fat Cells

(2015) Yongliang Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

E2F1 mediates sustained lipogenesis and contributes to hepatic steatosis

(2015) Pierre-Damien Denechaud et al.   JOURNAL OF CLINICAL INVESTIGATION

The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming

(2015) Jens Durruthy-Durruthy et al.   NATURE GENETICS

Long non-coding RNA profiling of human lymphoid progenitor cells reveals transcriptional divergence of B cell and T cell lineages

(2015) David Casero et al.   NATURE IMMUNOLOGY

DNA methylation signatures of long intergenic noncoding RNAs in porcine adipose and muscle tissues

(2015) Zhong-Yin Zhou et al.   Scientific Reports

ALDB: A Domestic-Animal Long Noncoding RNA Database

(2015) Aimin Li et al.   PLoS One

Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development

(2015) Weimin Zhao et al.   Scientific Reports

Identification and functional analysis of long non-coding RNAs in mouse cleavage stage embryonic development based on single cell transcriptome data

(2014) Kunshan Zhang et al.   BMC GENOMICS

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing

(2014) Coline Billerey et al.   BMC GENOMICS

Longissimus dorsi transcriptome analysis of purebred and crossbred Iberian pigs differing in muscle characteristics

(2014) Cristina Óvilo et al.   BMC GENOMICS

Intergenic lncRNAs and the evolution of gene expression

(2014) Ana C Marques et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Genome-Wide Identification of Long Intergenic Noncoding RNA Genes and Their Potential Association with Domestication in Pigs

(2014) Zhong-Yin Zhou et al.   Genome Biology and Evolution

Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types

(2014) Yang Yang et al.   Nature Communications

Genome-wide DNA Methylation Profiles and Their Relationships with mRNA and the microRNA Transcriptome in Bovine Muscle Tissue (Bos taurine)

(2014) Yong-Zhen Huang et al.   Scientific Reports

Integration of Genome-wide Approaches Identifies lncRNAs of Adult Neural Stem Cells and Their Progeny In Vivo

(2013) Alexander D. Ramos et al.   Cell Stem Cell

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Genome-wide analysis reveals distinct patterns of epigenetic features in long non-coding RNA loci

(2012) Satish Sati et al.   NUCLEIC ACIDS RESEARCH

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

(2011) A. Pauli et al.   GENOME RESEARCH

Homeostatic levels of SRC-2 and SRC-3 promote early human adipogenesis

(2011) Sean M. Hartig et al.   JOURNAL OF CELL BIOLOGY

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

(2011) Kevin C. Wang et al.   NATURE

lincRNAs act in the circuitry controlling pluripotency and differentiation

(2011) Mitchell Guttman et al.   NATURE

E2F transcription factor-1 regulates oxidative metabolism

(2011) Emilie Blanchet et al.   NATURE CELL BIOLOGY

Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network

(2011) Qi Liao et al.   NUCLEIC ACIDS RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Long Noncoding RNAs with Enhancer-like Function in Human Cells

(2010) Ulf Andersson Ørom et al.   CELL

Resveratrol Improves Myocardial Perfusion in a Swine Model of Hypercholesterolemia and Chronic Myocardial Ischemia

(2010) M. P. Robich et al.   CIRCULATION

Dynamic changes in the human methylome during differentiation

(2010) L. Laurent et al.   GENOME RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

(2010) Mitchell Guttman et al.   NATURE BIOTECHNOLOGY

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

(2010) Sabine Loewer et al.   NATURE GENETICS

Intramuscular fat content in meat-producing animals: development, genetic and nutritional control, and identification of putative markers

(2009) J. F. Hocquette et al.   Animal

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

(2009) Madeleine P Ball et al.   NATURE BIOTECHNOLOGY

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

(2009) Ahmad M. Khalil et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic and Transcriptional Co-Localization of Protein-Coding and Long Non-Coding RNA Pairs in the Developing Brain

(2009) Jasmina Ponjavic et al.   PLoS Genetics

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

(2008) M. E. Dinger et al.   GENOME RESEARCH

Geometric Interpretation of Gene Coexpression Network Analysis

(2008) Steve Horvath et al.   PLoS Computational Biology

Fat deposition, fatty acid composition and meat quality: A review

(2007) J.D. Wood et al.   MEAT SCIENCE