The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool

Temperature regulates methane production through the function centralization of microbial community in anaerobic digestion

(2016) Qiang Lin et al.   BIORESOURCE TECHNOLOGY

Bacterial community composition and fhs profiles of low- and high-ammonia biogas digesters reveal novel syntrophic acetate-oxidising bacteria

(2016) Bettina Müller et al.   Biotechnology for Biofuels

Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion

(2016) Jo De Vrieze et al.   Biotechnology for Biofuels

Techno-economic evaluation of integrated first- and second-generation ethanol production from grain and straw

(2016) Elisabeth Joelsson et al.   Biotechnology for Biofuels

Product Diversity Linked to Substrate Usage in Chain Elongation by Mixed-Culture Fermentation

(2016) Marta Coma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

The full-scale anaerobic digestion microbiome is represented by specific marker populations

(2016) Jo De Vrieze et al.   WATER RESEARCH

Reactor performances and microbial communities of biogas reactors: effects of inoculum sources

(2015) Sheng Han et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Dynamics of microbial community in a mesophilic anaerobic digester treating food waste: Relationship between community structure and process stability

(2015) Lei Li et al.   BIORESOURCE TECHNOLOGY

Cellulosic ethanol production by natural bacterial consortia is enhanced by Pseudoxanthomonas taiwanensis

(2015) Ran Du et al.   Biotechnology for Biofuels

Microbial management of anaerobic digestion: exploiting the microbiome-functionality nexus

(2015) Marta Carballa et al.   CURRENT OPINION IN BIOTECHNOLOGY

Determination of Methanogenic Pathways through Carbon Isotope (δ13C) Analysis for the Two-Stage Anaerobic Digestion of High-Solids Substrates

(2015) Tito Gehring et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

(2015) Melanie Schirmer et al.   NUCLEIC ACIDS RESEARCH

Stable isotope probing of acetate fed anaerobic batch incubations shows a partial resistance of acetoclastic methanogenesis catalyzed by Methanosarcina to sudden increase of ammonia level

(2015) Liping Hao et al.   WATER RESEARCH

Ammonia and temperature determine potential clustering in the anaerobic digestion microbiome

(2015) Jo De Vrieze et al.   WATER RESEARCH

Functionally redundant but dissimilar microbial communities within biogas reactors treating maize silage in co-fermentation with sugar beet silage

(2015) Susanne G. Langer et al.   Microbial Biotechnology

Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants

(2014) Ying Yang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

UProC: tools for ultra-fast protein domain classification

(2014) Peter Meinicke   BIOINFORMATICS

A metagenomic study of the microbial communities in four parallel biogas reactors

(2014) Linn Solli et al.   Biotechnology for Biofuels

Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters

(2014) Inka Vanwonterghem et al.   ISME Journal

Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant

(2014) Feng Ju et al.   ISME Journal

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

(2014) Rachel Poretsky et al.   PLoS One

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems

(2014) Ryan J. Williams et al.   Frontiers in Microbiology

MOABS: model based analysis of bisulfite sequencing data

(2014) Deqiang Sun et al.   GENOME BIOLOGY

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction

(2014) Florent E Angly et al.   Microbiome

Evaluation of stable isotope fingerprinting techniques for the assessment of the predominant methanogenic pathways in anaerobic digesters

(2013) M. Nikolausz et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

Substrate type drives variation in reactor microbiomes of anaerobic digesters

(2013) Wei Zhang et al.   BIORESOURCE TECHNOLOGY

Special Issue from the NSERC Bioconversion network workshop: pretreatment and fractionation of biomass for biorefinery/biofuels

(2013) Jack Saddler et al.   Biotechnology for Biofuels

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

(2013) Sergey I Nikolenko et al.   BMC GENOMICS

Integrated Analysis of Transcriptomic and Proteomic Data

(2013) Saad Haider et al.   CURRENT GENOMICS

Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques

(2013) Inka Vanwonterghem et al.   CURRENT OPINION IN BIOTECHNOLOGY

454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

(2013) Carina Sundberg et al.   FEMS MICROBIOLOGY ECOLOGY

Evidence of anaerobic syntrophic acetate oxidation in biogas batch reactors by analysis of13C carbon isotopes

(2013) Daniela Polag et al.   ISOTOPES IN ENVIRONMENTAL AND HEALTH STUDIES

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation

(2013) Angelika Hanreich et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Repeated pulse feeding induces functional stability in anaerobic digestion

(2013) Jo De Vrieze et al.   Microbial Biotechnology

Methanosarcina: The rediscovered methanogen for heavy duty biomethanation

(2012) Jo De Vrieze et al.   BIORESOURCE TECHNOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Classification of metagenomic sequences: methods and challenges

(2012) S. S. Mande et al.   BRIEFINGS IN BIOINFORMATICS

Increasing antagonistic interactions cause bacterial communities to collapse at high diversity

(2012) Joachim Becker et al.   ECOLOGY LETTERS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Microbial Resource Management revisited: successful parameters and new concepts

(2011) Suzanne Read et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Potential impact of process parameters upon the bacterial diversity in the mesophilic anaerobic digestion of beet silage

(2011) Niclas Krakat et al.   BIORESOURCE TECHNOLOGY

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial community structures are unique and resilient in full-scale bioenergy systems

(2011) J. J. Werner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlations between molecular and operational parameters in continuous lab-scale anaerobic reactors

(2010) Marta Carballa et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A meta-analysis of the microbial diversity observed in anaerobic digesters

(2010) Michael C. Nelson et al.   BIORESOURCE TECHNOLOGY

Identification of methanogenic pathways in anaerobic digesters using stable carbon isotopes

(2010) Stephan Laukenmann et al.   ENGINEERING IN LIFE SCIENCES

Novel primers for 16S rRNA-based archaeal community analyses in environmental samples

(2010) Stephan Gantner et al.   JOURNAL OF MICROBIOLOGICAL METHODS

State indicators for monitoring the anaerobic digestion process

(2010) Kanokwan Boe et al.   WATER RESEARCH

Centrality measures and the importance of generalist species in pollination networks

(2009) Ana M. Martín González et al.   Ecological Complexity

Pilot-Scale Validation of a New Sensor for On-Line Analysis of Volatile Fatty Acids and Alkalinity in Anaerobic Wastewater Treatment Plants

(2009) Francisco Molina et al.   ENVIRONMENTAL ENGINEERING SCIENCE

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

Keystone species and food webs

(2009) F. Jordan   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

How to get more out of molecular fingerprints: practical tools for microbial ecology

(2008) Massimo Marzorati et al.   ENVIRONMENTAL MICROBIOLOGY

The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology

(2008) Andreas Schlüter et al.   JOURNAL OF BIOTECHNOLOGY

The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review

(2008) Burak Demirel et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Inhibition of anaerobic digestion process: A review

(2007) Ye Chen et al.   BIORESOURCE TECHNOLOGY