Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants

Abundant rifampin resistance genes and significant correlations of antibiotic resistance genes and plasmids in various environments revealed by metagenomic analysis

(2014) Liping Ma et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Construction of Customized Sub-Databases from NCBI-nr Database for Rapid Annotation of Huge Metagenomic Datasets Using a Combined BLAST and MEGAN Approach

(2013) Ke Yu et al.   PLoS One

High frequency ultrasound pretreatment for sludge anaerobic digestion: Effect on floc structure and microbial population

(2012) C.M. Braguglia et al.   BIORESOURCE TECHNOLOGY

Micro-environment characteristics and microbial communities in activated sludge flocs of different particle size

(2012) Yunping Han et al.   BIORESOURCE TECHNOLOGY

Metagenomic analysis reveals the prevalence of biodegradation genes for organic pollutants in activated sludge

(2012) Hua Fang et al.   BIORESOURCE TECHNOLOGY

Structure, fluctuation and magnitude of a natural grassland soil metagenome

(2012) Tom O Delmont et al.   ISME Journal

Application of a real-time qPCR method to measure the methanogen concentration during anaerobic digestion as an indicator of biogas production capacity

(2012) Deborah Traversi et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Unlocking the potential of metagenomics through replicated experimental design

(2012) Rob Knight et al.   NATURE BIOTECHNOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metagenomic insights into chlorination effects on microbial antibiotic resistance in drinking water

(2012) Peng Shi et al.   WATER RESEARCH

Metagenomic Analysis of Kimchi, a Traditional Korean Fermented Food

(2011) Ji Young Jung et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transition of microbial communities during the adaption to anaerobic digestion of carrot waste

(2011) Sarahi L. Garcia et al.   BIORESOURCE TECHNOLOGY

Anaerobic digestion and co-digestion processes of vegetable and fruit residues: Process and microbial ecology

(2011) E.I. Garcia-Peña et al.   BIORESOURCE TECHNOLOGY

A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal

(2011) Mads Albertsen et al.   ISME Journal

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

(2011) Tong Zhang et al.   ISME Journal

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

(2011) Rachel Mackelprang et al.   NATURE

Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing

(2011) Sebastian Jaenicke et al.   PLoS One

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium

(2011) Hung Duc Nguyen et al.   WATER RESEARCH

Kosmotoga arenicorallina sp. nov. a thermophilic and obligately anaerobic heterotroph isolated from a shallow hydrothermal system occurring within a coral reef, southern part of the Yaeyama Archipelago, Japan, reclassification of Thermococcoides shengliensis as Kosmotoga shengliensis comb. nov., and emended description of the genus Kosmotoga

(2010) Takuro Nunoura et al.   ARCHIVES OF MICROBIOLOGY

Qualitative and quantitative assessment of microbial community in batch anaerobic digestion of secondary sludge

(2010) Seung Gu Shin et al.   BIORESOURCE TECHNOLOGY

Microbial community dynamics in mesophilic anaerobic co-digestion of mixed waste

(2010) Savaporn Supaphol et al.   BIORESOURCE TECHNOLOGY

Anaerobic digestion of slaughterhouse waste: Main process limitations and microbial community interactions

(2010) J. Palatsi et al.   BIORESOURCE TECHNOLOGY

Replicate or lie

(2010) James I. Prosser   ENVIRONMENTAL MICROBIOLOGY

BIPES, a cost-effective high-throughput method for assessing microbial diversity

(2010) Hong-Wei Zhou et al.   ISME Journal

Central Carbon Metabolism as a Minimal Biochemical Walk between Precursors for Biomass and Energy

(2010) Elad Noor et al.   MOLECULAR CELL

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Metagenomic Profiling of a Microbial Assemblage Associated with the California Mussel: A Node in Networks of Carbon and Nitrogen Cycling

(2010) Catherine A. Pfister et al.   PLoS One

The Influence of Sludge Interchange Times on the Oxic-Settling-Anoxic Process

(2010) Lianpeng Sun et al.   WATER ENVIRONMENT RESEARCH

Long-chain fatty acids inhibition and adaptation process in anaerobic thermophilic digestion: Batch tests, microbial community structure and mathematical modelling

(2009) J. Palatsi et al.   BIORESOURCE TECHNOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Kosmotoga olearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid

(2009) J. L. DiPippo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge

(2009) Delphine Rivière et al.   ISME Journal

Systematic artifacts in metagenomes from complex microbial communities

(2009) Vicente Gomez-Alvarez et al.   ISME Journal

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Influence of organic loading rate and hydraulic retention time on the performance, stability and microbial communities of one-stage anaerobic digestion of two-phase olive mill solid residue

(2008) B. Rincón et al.   BIOCHEMICAL ENGINEERING JOURNAL

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

(2008) Mya Breitbart et al.   ENVIRONMENTAL MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

The impact of next-generation sequencing technology on genetics

(2008) Elaine R. Mardis   TRENDS IN GENETICS