Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion

Bacterial community composition and fhs profiles of low- and high-ammonia biogas digesters reveal novel syntrophic acetate-oxidising bacteria

(2016) Bettina Müller et al.   Biotechnology for Biofuels

Absolute quantification of microbial taxon abundances

(2016) Ruben Props et al.   ISME Journal

Reactor performances and microbial communities of biogas reactors: effects of inoculum sources

(2015) Sheng Han et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Evidence of syntrophic acetate oxidation by Spirochaetes during anaerobic methane production

(2015) Sang-Hoon Lee et al.   BIORESOURCE TECHNOLOGY

Cellulosic ethanol production by natural bacterial consortia is enhanced by Pseudoxanthomonas taiwanensis

(2015) Ran Du et al.   Biotechnology for Biofuels

Microbial management of anaerobic digestion: exploiting the microbiome-functionality nexus

(2015) Marta Carballa et al.   CURRENT OPINION IN BIOTECHNOLOGY

Persistence of Methanosaeta populations in anaerobic digestion during process instability

(2015) Si Chen et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

How to use molecular biology tools for the study of the anaerobic digestion process?

(2015) Angela Cabezas et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Ammonia and temperature determine potential clustering in the anaerobic digestion microbiome

(2015) Jo De Vrieze et al.   WATER RESEARCH

How to use molecular biology tools for the study of the anaerobic digestion process?

(2015) Angela Cabezas et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions

(2015) Katharina Burbach et al.   MicrobiologyOpen

Inoculum selection is crucial to ensure operational stability in anaerobic digestion

(2014) Jo De Vrieze et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Anaerobic digestion of molasses by means of a vibrating and non-vibrating submerged anaerobic membrane bioreactor

(2014) Jo De Vrieze et al.   BIOMASS & BIOENERGY

Integrated ‘omics analysis for studying the microbial community response to a pH perturbation of a cellulose-degrading bioreactor culture

(2014) Amy A. Boaro et al.   FEMS MICROBIOLOGY ECOLOGY

Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters

(2014) Inka Vanwonterghem et al.   ISME Journal

Effect of ammonia inhibition on microbial community dynamic and process functional resilience in mesophilic methane fermentation of chicken manure

(2014) Qigui Niu et al.   JOURNAL OF CHEMICAL TECHNOLOGY AND BIOTECHNOLOGY

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

(2014) Rachel Poretsky et al.   PLoS One

Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plants

(2013) F. Kohrs et al.   ANAEROBE

Microbial community acclimation enhances waste hydrolysis rates under elevated ammonia and salinity conditions

(2013) L.Paige Wilson et al.   BIORESOURCE TECHNOLOGY

Molecular characterization of anaerobic digester microbial communities identifies microorganisms that correlate to reactor performance

(2013) Jennifer R. Town et al.   BIORESOURCE TECHNOLOGY

Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques

(2013) Inka Vanwonterghem et al.   CURRENT OPINION IN BIOTECHNOLOGY

Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing

(2013) Amélia Camarinha-Silva et al.   ENVIRONMENTAL MICROBIOLOGY

454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

(2013) Carina Sundberg et al.   FEMS MICROBIOLOGY ECOLOGY

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Application of a molecular based approach for the early detection of short term 3-chloroaniline shock loads on activated sludge bacterial community and functionality

(2013) Massimo Marzorati et al.   New Biotechnology

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation

(2013) Angelika Hanreich et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Repeated pulse feeding induces functional stability in anaerobic digestion

(2013) Jo De Vrieze et al.   Microbial Biotechnology

Methanosarcina: The rediscovered methanogen for heavy duty biomethanation

(2012) Jo De Vrieze et al.   BIORESOURCE TECHNOLOGY

Early warning indicators for process failure due to organic overloading by rapeseed oil in one-stage continuously stirred tank reactor, sewage sludge and waste digesters

(2012) A. Kleyböcker et al.   BIORESOURCE TECHNOLOGY

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing

(2012) Martha Zakrzewski et al.   JOURNAL OF BIOTECHNOLOGY

Relationship between microbial activity and microbial community structure in six full-scale anaerobic digesters

(2012) Leticia Regueiro et al.   MICROBIOLOGICAL RESEARCH

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Anaerobic digestion from the viewpoint of microbiological, chemical, and operational aspects — a review

(2011) T. Amani et al.   ENVIRONMENTAL REVIEWS

A metaproteomic approach gives functional insights into anaerobic digestion

(2011) F. Abram et al.   JOURNAL OF APPLIED MICROBIOLOGY

In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes

(2011) Laura C. Bohorquez et al.   MICROBIAL ECOLOGY

Bacterial community structures are unique and resilient in full-scale bioenergy systems

(2011) J. J. Werner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlations between molecular and operational parameters in continuous lab-scale anaerobic reactors

(2010) Marta Carballa et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A meta-analysis of the microbial diversity observed in anaerobic digesters

(2010) Michael C. Nelson et al.   BIORESOURCE TECHNOLOGY

State indicators for monitoring the anaerobic digestion process

(2010) Kanokwan Boe et al.   WATER RESEARCH

Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge

(2009) Delphine Rivière et al.   ISME Journal

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

Operation control of anaerobic digesters on the basis of enzyme activity tests

(2009) Levente Kardos et al.   WATER SCIENCE AND TECHNOLOGY

How to get more out of molecular fingerprints: practical tools for microbial ecology

(2008) Massimo Marzorati et al.   ENVIRONMENTAL MICROBIOLOGY

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

(2008) Z. M.-P. Lee et al.   NUCLEIC ACIDS RESEARCH

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Inhibition of anaerobic digestion process: A review

(2007) Ye Chen et al.   BIORESOURCE TECHNOLOGY

Evaluation of molecular methods used for establishing the interactions and functions of microorganisms in anaerobic bioreactors

(2007) G. Talbot et al.   WATER RESEARCH