Apple endophytic microbiota of different rootstock/scion combinations suggests a genotype-specific influence

Functional outcomes of fungal community shifts driven by tree genotype and spatial-temporal factors in Mediterranean pine forests

(2017) Leticia Pérez-Izquierdo et al.   ENVIRONMENTAL MICROBIOLOGY

Interactions between soil- and dead wood-inhabiting fungal communities during the decay of Norway spruce logs

(2017) Raisa Mäkipää et al.   ISME Journal

Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement

(2017) Naibin Duan et al.   Nature Communications

Mycorrhizal trifoliate orange has greater root adaptation of morphology and phytohormones in response to drought stress

(2017) Ying-Ning Zou et al.   Scientific Reports

Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes

(2017) Franziska Wemheuer et al.   Scientific Reports

Plant growth-promotingBurkholderiaspecies isolated from annual ryegrass in Portuguese soils

(2016) N. Castanheira et al.   JOURNAL OF APPLIED MICROBIOLOGY

Analysis of the Fungal Diversity in Citrus Leaves with Greasy Spot Disease Symptoms

(2016) Ahmed Abdelfattah et al.   MICROBIAL ECOLOGY

Plant domestication and the assembly of bacterial and fungal communities associated with strains of the common sunflower, Helianthus annuus

(2016) Jonathan W. Leff et al.   NEW PHYTOLOGIST

Seedling growth promotion and nitrogen fixation by a bacterial endophyte Paenibacillus polymyxa P2b-2R and its GFP derivative in corn in a long-term trial

(2016) Akshit Puri et al.   SYMBIOSIS

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Spatial and compositional variation in the fungal communities of organic and conventionally grown apple fruit at the consumer point-of-purchase

(2016) Ahmed Abdelfattah et al.   Horticulture Research

Metagenomic Analysis of Fungal Diversity on Strawberry Plants and the Effect of Management Practices on the Fungal Community Structure of Aerial Organs

(2016) Ahmed Abdelfattah et al.   PLoS One

Crosstalk between sugarcane and a plant-growth promoting Burkholderia species

(2016) Chanyarat Paungfoo-Lonhienne et al.   Scientific Reports

BrassicaSeed Meal Soil Amendments Transform the Rhizosphere Microbiome and Improve Apple Production Through Resistance to Pathogen Reinfestation

(2015) Mark Mazzola et al.   PHYTOPATHOLOGY

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Accuracy and responses of genomic selection on key traits in apple breeding

(2015) Hélène Muranty et al.   Horticulture Research

Bacterial Endophytic Communities in the Grapevine Depend on Pest Management

(2014) Andrea Campisano et al.   PLoS One

MetaQTL analysis provides a compendium of genomic loci controlling fruit quality traits in apple

(2014) Fabrizio Costa   Tree Genetics & Genomes

Genetic and environmental control of fruit maturation, dry matter and firmness in apple (Malus × domestica Borkh.)

(2014) David Chagné et al.   Horticulture Research

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

(2013) Miklós Bálint et al.   PLoS One

Manure Refinement Affects Apple Rhizosphere Bacterial Community Structure: A Study in Sandy Soil

(2013) Qiang Zhang et al.   PLoS One

Unexpected Diversity during Community Succession in the Apple Flower Microbiome

(2013) A. Shade et al.   mBio

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

Community structure and preference of endophytic fungi of three woody plants in a mixed forest

(2012) X. Sun et al.   Fungal Ecology

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Bacterial diversity on the surface of potato tubers in soil and the influence of the plant genotype

(2010) Nicole Weinert et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Paenibacillus—a predominant endophytic bacterium colonising tissue cultures of woody plants

(2008) Kristina Ulrich et al.   PLANT CELL TISSUE AND ORGAN CULTURE