Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes

Impact of grassland management regimes on bacterial endophyte diversity differs with grass species

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The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity

(2016) Citlali Fonseca-García et al.   Frontiers in Microbiology

Influences of Plant Species, Season and Location on Leaf Endophytic Bacterial Communities of Non-Cultivated Plants

(2016) Tao Ding et al.   PLoS One

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Plant genotype and nitrogen fertilization effects on abundance and diversity of diazotrophic bacteria associated with maize (Zea mays L.)

(2015) Andrea Rodríguez-Blanco et al.   BIOLOGY AND FERTILITY OF SOILS

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Tumebacillus luteolus sp. nov., isolated from soil

(2015) Jihee Her et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Impact of metagenomic DNA extraction procedures on the identifiable endophytic bacterial diversity in Sorghum bicolor (L. Moench)

(2015) Mapula Kgomotso Annah Maropola et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

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The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

A primary assessment of the endophytic bacterial community in a xerophilous moss (Grimmia montana) using molecular method and cultivated isolates

(2014) Xiao Lei Liu et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Bacterial Endophytic Communities in the Grapevine Depend on Pest Management

(2014) Andrea Campisano et al.   PLoS One

Niche and host-associated functional signatures of the root surface microbiome

(2014) Maya Ofek-Lalzar et al.   Nature Communications

Culture dependent and independent analysis of bacterial communities associated with commercial salad leaf vegetables

(2013) Colin R Jackson et al.   BMC MICROBIOLOGY

Associating microbiome composition with environmental covariates using generalized UniFrac distances

(2012) Jun Chen et al.   BIOINFORMATICS

Caenimonas terrae sp. nov., isolated from a soil sample in Korea, and emended description of the genus Caenimonas Ryu et al. 2008

(2012) Soo-Jin Kim et al.   JOURNAL OF MICROBIOLOGY

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages

(2012) Pablo R. Hardoim et al.   PLoS One

Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System

(2011) Gerd Innerebner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Manipulating the species composition of permanent grasslands—A new approach to biodiversity experiments

(2011) U. Petersen et al.   BASIC AND APPLIED ECOLOGY

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant growth-promoting rhizobacteria (PGPR): emergence in agriculture

(2011) P. N. Bhattacharyya et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The communities of endophytic diazotrophic bacteria in cultivated rice (Oryza sativa L.)

(2009) Janpen Prakamhang et al.   APPLIED SOIL ECOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Luteimonas terricola sp. nov., a psychrophilic bacterium isolated from soil

(2009) D.-C. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Nitrilase enzymes and their role in plant-microbe interactions

(2009) Andrew J. M. Howden et al.   Microbial Biotechnology

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY