Accuracy and responses of genomic selection on key traits in apple breeding

Breeding Elite Lines of Apple Carrying Pyramided Homozygous Resistance Genes Against Apple Scab and Resistance Against Powdery Mildew and Fire Blight

(2015) Isabelle O. Baumgartner et al.   PLANT MOLECULAR BIOLOGY REPORTER

Genome-Enabled Estimates of Additive and Nonadditive Genetic Variances and Prediction of Apple Phenotypes Across Environments

(2015) Satish Kumar et al.   G3-Genes Genomes Genetics

Genome-enabled predictions for binomial traits in sugar beet populations

(2014) Filippo Biscarini et al.   BMC GENETICS

Evaluation of Genomic Selection Training Population Designs and Genotyping Strategies in Plant Breeding Programs Using Simulation

(2014) John M. Hickey et al.   CROP SCIENCE

Linkage Disequilibrium with Linkage Analysis of Multiline Crosses Reveals Different Multiallelic QTL for Hybrid Performance in the Flint and Dent Heterotic Groups of Maize

(2014) Héloïse Giraud et al.   GENETICS

Accuracy of genomic selection models in a large population of open-pollinated families in white spruce

(2014) J Beaulieu et al.   HEREDITY

Is the use of formulae a reliable way to predict the accuracy of genomic selection?

(2014) S. Brard et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Accelerating the Switchgrass (Panicum virgatum L.) Breeding Cycle Using Genomic Selection Approaches

(2014) Alexander E. Lipka et al.   PLoS One

Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh)

(2014) Luca Bianco et al.   PLoS One

Bayesian QTL analyses using pedigreed families of an outcrossing species, with application to fruit firmness in apple

(2014) M. C. A. M. Bink et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection prediction accuracy in a perennial crop: case study of oil palm (Elaeis guineensis Jacq.)

(2014) David Cros et al.   THEORETICAL AND APPLIED GENETICS

MetaQTL analysis provides a compendium of genomic loci controlling fruit quality traits in apple

(2014) Fabrizio Costa   Tree Genetics & Genomes

Potential for marker-assisted selection for forest tree breeding: lessons from 20 years of MAS in crops

(2014) H. Muranty et al.   Tree Genetics & Genomes

Threshold Models for Genome-Enabled Prediction of Ordinal Categorical Traits in Plant Breeding

(2014) Osval A. Montesinos-López et al.   G3-Genes Genomes Genetics

Breeding better cultivars, faster: applications of new technologies for the rapid deployment of superior horticultural tree crops

(2014) Steve van Nocker et al.   Horticulture Research

Potential assessment of genome-wide association study and genomic selection in Japanese pear Pyrus pyrifolia

(2013) Hiroyoshi Iwata et al.   BREEDING SCIENCE

Genomic, Marker-Assisted, and Pedigree-BLUP Selection Methods for β-Glucan Concentration in Elite Oat

(2013) Franco G. Asoro et al.   CROP SCIENCE

Practical implementation of cost-effective genomic selection in commercial pig breeding using imputation1

(2013) M. A. Cleveland et al.   JOURNAL OF ANIMAL SCIENCE

Comparison of whole-genome prediction models for traits with contrasting genetic architecture in a diversity panel of maize inbred lines

(2012) Christian Riedelsheimer et al.   BMC GENOMICS

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

Bayesian methods for estimating GEBVs of threshold traits

(2012) C-L Wang et al.   HEREDITY

Pedimap: Software for the Visualization of Genetic and Phenotypic Data in Pedigrees

(2012) R. E. Voorrips et al.   JOURNAL OF HEREDITY

Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees

(2012) Marcos D. V. Resende et al.   NEW PHYTOLOGIST

Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple

(2012) David Chagné et al.   PLoS One

Genomic Selection for Fruit Quality Traits in Apple (Malus×domestica Borkh.)

(2012) Satish Kumar et al.   PLoS One

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

Genomic Selection Accuracy for Grain Quality Traits in Biparental Wheat Populations

(2011) Elliot L. Heffner et al.   CROP SCIENCE

Using the genomic relationship matrix to predict the accuracy of genomic selection

(2011) M.E. Goddard et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Reliability of direct genomic values for animals with different relationships within and to the reference population

(2011) M. Pszczola et al.   JOURNAL OF DAIRY SCIENCE

Deciphering the genetic determinism of bud phenology in apple progenies: a new insight into chilling and heat requirement effects on flowering dates and positional candidate genes

(2011) J-M. Celton et al.   NEW PHYTOLOGIST

Evaluation of genome-wide selection efficiency in maize nested association mapping populations

(2011) Zhigang Guo et al.   THEORETICAL AND APPLIED GENETICS

Genome-based prediction of testcross values in maize

(2011) Theresa Albrecht et al.   THEORETICAL AND APPLIED GENETICS

Accuracy of genomic selection in European maize elite breeding populations

(2011) Yusheng Zhao et al.   THEORETICAL AND APPLIED GENETICS

Prospects for genomic selection in conifer breeding: a simulation study of Cryptomeria japonica

(2011) Hiroyoshi Iwata et al.   Tree Genetics & Genomes

Towards genomic selection in apple (Malus × domestica Borkh.) breeding programmes: Prospects, challenges and strategies

(2011) Satish Kumar et al.   Tree Genetics & Genomes

QTL dynamics for fruit firmness and softening around an ethylene-dependent polygalacturonase gene in apple (Malusxdomestica Borkh.)

(2010) F. Costa et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Genomic Selection Using Low-Density Marker Panels

(2009) D. Habier et al.   GENETICS

Two distinct major QTL for resistance to fire blight co-localize on linkage group 12 in apple genotypes ‘Evereste’ and Malus floribunda clone 821

(2009) C.-E. Durel et al.   GENOME

Towards improvement of marker assisted selection of apple scab resistant cultivars: Venturia inaequalis virulence surveys and standardization of molecular marker alleles associated with resistance genes

(2009) A. Patocchi et al.   MOLECULAR BREEDING

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

Estimation of genetic parameters and prediction of breeding values for apple fruit-quality traits using pedigreed plant material in Europe

(2009) Abou Bakari Kouassi et al.   Tree Genetics & Genomes

Dissecting apple tree architecture into genetic, ontogenetic and environmental effects: mixed linear modelling of repeated spatial and temporal measures

(2008) Vincent Segura et al.   NEW PHYTOLOGIST

Accuracy of Predicting the Genetic Risk of Disease Using a Genome-Wide Approach

(2008) Hans D. Daetwyler et al.   PLoS One

Identification and stability of QTLs for fruit quality traits in apple

(2008) Katrien Kenis et al.   Tree Genetics & Genomes