Genomic Characterization of Listeria monocytogenes Isolates Associated with Clinical Listeriosis and the Food Production Environment in Ireland

A 3-year multi-food study of the presence and persistence of Listeria monocytogenes in 54 small food businesses in Ireland

(2017) Dara Leong et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Genome-wide-analyses of Listeria monocytogenes from food-processing plants reveal clonal diversity and date the emergence of persisting sequence types

(2017) Gitte M. Knudsen et al.   Environmental Microbiology Reports

An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes

(2017) Clémentine Henri et al.   Frontiers in Microbiology

Whole-genome Sequencing Used to Investigate a Nationwide Outbreak of Listeriosis Caused by Ready-to-eat Delicatessen Meat, Denmark, 2014

(2016) Anne Kvistholm Jensen et al.   CLINICAL INFECTIOUS DISEASES

Identification of antibiotic resistance genes in the multidrug-resistant Acinetobacter baumannii strain, MDR-SHH02, using whole-genome sequencing

(2016) Hualiang Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity

(2016) Mylène M Maury et al.   NATURE GENETICS

Bacteriocin from epidemicListeriastrains alters the host intestinal microbiota to favor infection

(2016) Juan J. Quereda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes

(2016) Alexandra Moura et al.   Nature Microbiology

PanCoreGen — Profiling, detecting, annotating protein-coding genes in microbial genomes

(2015) Sandip Paul et al.   GENOMICS

Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes

(2015) Jason C. Kwong et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Characterization of Foodborne Outbreaks of Salmonella enterica Serovar Enteritidis with Whole-Genome Sequencing Single Nucleotide Polymorphism-Based Analysis for Surveillance and Outbreak Detection

(2015) Angela J. Taylor et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Examination of Listeria monocytogenes in Seafood Processing Facilities and Smoked Salmon in the Republic of Ireland

(2015) DARA LEONG et al.   JOURNAL OF FOOD PROTECTION

The global burden of listeriosis: a systematic review and meta-analysis

(2014) Charline Maertens de Noordhout et al.   LANCET INFECTIOUS DISEASES

Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica

(2014) Pimlapas Leekitcharoenphon et al.   PLoS One

Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

(2014) Rolf S. Kaas et al.   PLoS One

Listeria monocytogenes: survival and adaptation in the gastrointestinal tract

(2014) Cormac G. M. Gahan et al.   Frontiers in Cellular and Infection Microbiology

Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome

(2013) Carsten Kuenne et al.   BMC GENOMICS

The ubiquitous nature ofListeria monocytogenesclones: a large-scale Multilocus Sequence Typing study

(2013) Jana K. Haase et al.   ENVIRONMENTAL MICROBIOLOGY

“Epidemic Clones” of Listeria monocytogenes Are Widespread and Ancient Clonal Groups

(2013) Thomas Cantinelli et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Interactive microbial genome visualization with GView

(2010) Aaron Petkau et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss

(2010) Henk C den Bakker et al.   BMC GENOMICS

Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification

(2010) Xiangyu Deng et al.   BMC GENOMICS

A five-gene stress survival islet (SSI-1) that contributes to the growth of Listeria monocytogenes in suboptimal conditions

(2010) S. Ryan et al.   JOURNAL OF APPLIED MICROBIOLOGY

Reordering contigs of draft genomes using the Mauve Aligner

(2009) Anna I. Rissman et al.   BIOINFORMATICS

Reconciling Ecological and Genomic Divergence among Lineages of Listeria under an "Extended Mosaic Genome Concept"

(2009) K. A. Dunn et al.   MOLECULAR BIOLOGY AND EVOLUTION

inlA Premature Stop Codons Are Common among Listeria monocytogenes Isolates from Foods and Yield Virulence-Attenuated Strains That Confer Protection against Fully Virulent Strains

(2008) K. K. Nightingale et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Conjugated action of two species-specific invasion proteins for fetoplacental listeriosis

(2008) Olivier Disson et al.   NATURE

A New Perspective on Listeria monocytogenes Evolution

(2008) Marie Ragon et al.   PLoS Pathogens

Listeriolysin S, a Novel Peptide Haemolysin Associated with a Subset of Lineage I Listeria monocytogenes

(2008) Paul D. Cotter et al.   PLoS Pathogens