Genome-wide-analyses of Listeria monocytogenes from food-processing plants reveal clonal diversity and date the emergence of persisting sequence types

Whole-genome Sequencing Used to Investigate a Nationwide Outbreak of Listeriosis Caused by Ready-to-eat Delicatessen Meat, Denmark, 2014

(2016) Anne Kvistholm Jensen et al.   CLINICAL INFECTIOUS DISEASES

Characterization of a transferable bcrABC and cadAC genes-harboring plasmid in Listeria monocytogenes strain isolated from food products of animal origin

(2016) Dongyang Xu et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity

(2016) Mylène M Maury et al.   NATURE GENETICS

Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes

(2016) Alexandra Moura et al.   Nature Microbiology

Genome Analysis of Listeria monocytogenes Sequence Type 8 Strains Persisting in Salmon and Poultry Processing Environments and Comparison with Related Strains

(2016) Annette Fagerlund et al.   PLoS One

The Connection between Persistent, Disinfectant-Resistant Listeria monocytogenes Strains from Two Geographically Separate Iberian Pork Processing Plants: Evidence from Comparative Genome Analysis

(2015) Sagrario Ortiz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Processing-Dependent and Clonal Contamination Patterns of Listeria monocytogenes in the Cured Ham Food Chain Revealed by Genetic Analysis

(2015) Marina Morganti et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Whole-Genome Sequencing Allows for Improved Identification of Persistent Listeria monocytogenes in Food-Associated Environments

(2015) Matthew J. Stasiewicz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phenotypic and genotypic characteristics of Listeria monocytogenes strains isolated during 2011–2014 from different food matrices in Switzerland

(2015) Rebecca Ebner et al.   FOOD CONTROL

Listeria monocytogenes isolated from food samples from a Romanian black market show distinct virulence profiles

(2015) Luminita Ciolacu et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes

(2015) Jason C. Kwong et al.   JOURNAL OF CLINICAL MICROBIOLOGY

It Is Not All about Single Nucleotide Polymorphisms: Comparison of Mobile Genetic Elements and Deletions in Listeria monocytogenes Genomes Links Cases of Hospital-Acquired Listeriosis to the Environmental Source

(2015) Qinning Wang et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Seek and Destroy Process: Listeria monocytogenes Process Controls in the Ready-to-Eat Meat and Poultry Industry

(2015) THOMAS J. V. MALLEY et al.   JOURNAL OF FOOD PROTECTION

Genomes of sequence type 121 Listeria monocytogenes strains harbor highly conserved plasmids and prophages

(2015) Stephan Schmitz-Esser et al.   Frontiers in Microbiology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Persistence of foodborne pathogens and their control in primary and secondary food production chains

(2014) Marianne Halberg Larsen et al.   FOOD CONTROL

Diversity and distribution of Listeria monocytogenes in meat processing plants

(2014) Belén Martín et al.   FOOD MICROBIOLOGY

Characterization of Listeria monocytogenes Strains Isolated During 2011–2013 from Human Infections in Switzerland

(2014) Denise Althaus et al.   Foodborne Pathogens and Disease

Listeria monocytogenes Persistence in Food-Associated Environments: Epidemiology, Strain Characteristics, and Implications for Public Health

(2014) V. FERREIRA et al.   JOURNAL OF FOOD PROTECTION

Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica

(2014) Pimlapas Leekitcharoenphon et al.   PLoS One

Genome Sequencing Identifies Two Nearly Unchanged Strains of Persistent Listeria monocytogenes Isolated at Two Different Fish Processing Plants Sampled 6 Years Apart

(2013) Anne Holch et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome

(2013) Carsten Kuenne et al.   BMC GENOMICS

Selected insights from application of whole-genome sequencing for outbreak investigations

(2013) Vien Thi Minh Le et al.   Current Opinion in Critical Care

Control of Listeria monocytogenes contamination in an Iberian pork processing plant and selection of benzalkonium chloride-resistant strains

(2013) Sagrario Ortiz et al.   FOOD MICROBIOLOGY

Collaborative Survey on the Colonization of Different Types of Cheese-Processing Facilities with Listeria monocytogenes

(2013) Beatrix Stessl et al.   Foodborne Pathogens and Disease

Biofilm infections, their resilience to therapy and innovative treatment strategies

(2013) U. Römling et al.   JOURNAL OF INTERNAL MEDICINE

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis

(2013) Christopher B Ford et al.   NATURE GENETICS

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

Evolutionary Dynamics of the Accessory Genome of Listeria monocytogenes

(2013) Henk C. den Bakker et al.   PLoS One

Tn6188 - A Novel Transposon in Listeria monocytogenes Responsible for Tolerance to Benzalkonium Chloride

(2013) Anneliese Müller et al.   PLoS One

Two Novel Type II Restriction-Modification Systems Occupying Genomically Equivalent Locations on the Chromosomes of Listeria monocytogenes Strains

(2012) Sangmi Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes

(2012) Torsten Hain et al.   BMC GENOMICS

An Ecological Perspective ofListeria monocytogenesBiofilms in Food Processing Facilities

(2012) Wladir B. Valderrama et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies

(2012) Sajia Akhter et al.   NUCLEIC ACIDS RESEARCH

Stress Survival Islet 1 (SSI-1) Survey inListeria monocytogenesReveals an Insert Common toListeria innocuain Sequence Type 121L. monocytogenesStrains

(2011) Ingeborg Hein et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Review — Persistence of Listeria monocytogenes in food industry equipment and premises

(2011) Brigitte Carpentier et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Illuminating the landscape of host-pathogen interactions with the bacterium Listeria monocytogenes

(2011) P. Cossart   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss

(2010) Henk C den Bakker et al.   BMC GENOMICS

Aminoglycoside modifying enzymes

(2010) Maria S. Ramirez et al.   DRUG RESISTANCE UPDATES

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Listeria monocytogenes in Irish Farmhouse cheese processing environments

(2010) Edward Fox et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

A five-gene stress survival islet (SSI-1) that contributes to the growth of Listeria monocytogenes in suboptimal conditions

(2010) S. Ryan et al.   JOURNAL OF APPLIED MICROBIOLOGY

Short-term genome evolution of Listeria monocytogenes in a non-controlled environment

(2009) Renato H Orsi et al.   BMC GENOMICS

Listeria monocytogenes — from saprophyte to intracellular pathogen

(2009) Nancy E. Freitag et al.   NATURE REVIEWS MICROBIOLOGY

Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes

(2008) Renato H Orsi et al.   BMC EVOLUTIONARY BIOLOGY

Lineage specific recombination rates and microevolution in Listeria monocytogenes

(2008) Henk C den Bakker et al.   BMC EVOLUTIONARY BIOLOGY

Poor detection of low-virulence field strains of L. monocytogenes is related to selective agents in selective media and is unrelated to PrfA

(2008) S ROCHE et al.   FOOD MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

A New Perspective on Listeria monocytogenes Evolution

(2008) Marie Ragon et al.   PLoS Pathogens