Genomic Signatures of Reinforcement

Coupling, Reinforcement, and Speciation

(2018) Roger K. Butlin et al.   AMERICAN NATURALIST

Mechanisms of Assortative Mating in Speciation with Gene Flow: Connecting Theory and Empirical Research

(2018) Michael Kopp et al.   AMERICAN NATURALIST

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

(2017) M. Ravinet et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Do changes in gene expression contribute to sexual isolation and reinforcement in the house mouse?

(2017) Etienne Loire et al.   MOLECULAR ECOLOGY

Genomic evidence of gene flow during reinforcement in Texas Phlox

(2017) Federico Roda et al.   MOLECULAR ECOLOGY

Variation in recombination frequency and distribution across eukaryotes: patterns and processes

(2017) Jessica Stapley et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Fine scale mapping of genomic introgressions within the Drosophila yakuba clade

(2017) David A. Turissini et al.   PLoS Genetics

A survey of methods and tools to detect recent and strong positive selection

(2017) Pavlos Pavlidis et al.   Journal of Biological Research-Thessaloniki

SweepFinder2: increased sensitivity, robustness and flexibility

(2016) Michael DeGiorgio et al.   BIOINFORMATICS

Patterns of reproductive isolation in theDrosophila subquinariacomplex: can reinforced premating isolation cascade to other species?

(2016) Devon P. Humphreys et al.   Current Zoology

Geographic cline analysis as a tool for studying genome-wide variation: a case study of pollinator-mediated divergence in a monkeyflower

(2016) Sean Stankowski et al.   MOLECULAR ECOLOGY

Genomics of local adaptation with gene flow

(2016) Anna Tigano et al.   MOLECULAR ECOLOGY

A genomic perspective on hybridization and speciation

(2016) Bret A. Payseur et al.   MOLECULAR ECOLOGY

Genomics of hybridization and its evolutionary consequences

(2016) Richard J. Abbott et al.   MOLECULAR ECOLOGY

Correlated evolution of male and female reproductive traits drive a cascading effect of reinforcement inDrosophila yakuba

(2016) Aaron A. Comeault et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Recombination Rate Evolution and the Origin of Species

(2016) Daniel Ortiz-Barrientos et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation

(2016) James B. Pease et al.   PLOS BIOLOGY

Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent

(2016) Dingqiao Wen et al.   PLoS Genetics

Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback

(2016) David A. Marques et al.   PLoS Genetics

Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting

(2016) Claudia Solís-Lemus et al.   PLoS Genetics

Patterns of reproductive isolation in theDrosophila subquinariacomplex: can reinforced premating isolation cascade to other species?

(2016) Devon P. Humphreys et al.   Current Zoology

Behavioral Isolation due to Cascade Reinforcement in Lucania Killifish

(2015) Genevieve M. Kozak et al.   AMERICAN NATURALIST

Seeking signatures of reinforcement at the genetic level: a hitchhiking mapping and candidate gene approach in the house mouse

(2015) Carole M. Smadja et al.   MOLECULAR ECOLOGY

The Cost of Reinforcement: Selection on Flower Color in Allopatric Populations of Phlox drummondii

(2014) Robin Hopkins et al.   AMERICAN NATURALIST

LANDSCAPE GENOMICS OFPOPULUS TRICHOCARPA: THE ROLE OF HYBRIDIZATION, LIMITED GENE FLOW, AND NATURAL SELECTION IN SHAPING PATTERNS OF POPULATION STRUCTURE

(2014) Armando Geraldes et al.   EVOLUTION

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Genetics of ecological divergence during speciation

(2014) Matthew E. Arnegard et al.   NATURE

Genomics and the origin of species

(2014) Ole Seehausen et al.   NATURE REVIEWS GENETICS

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

Detecting Natural Selection in Genomic Data

(2013) Joseph J. Vitti et al.   Annual Review of Genetics

REPRODUCTIVE CHARACTER DISPLACEMENT OF EPICUTICULAR COMPOUNDS AND THEIR CONTRIBUTION TO MATE CHOICE INDROSOPHILA SUBQUINARIAANDDROSOPHILA RECENS

(2013) Kelly A. Dyer et al.   EVOLUTION

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Pulling together or pulling apart: hybridization in theory and practice

(2013) R. K. Butlin et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic evidence for the parallel evolution of coastal forms in theSenecio lautuscomplex

(2013) Federico Roda et al.   MOLECULAR ECOLOGY

Analyses of genetic ancestry enable key insights for molecular ecology

(2013) Zachariah Gompert et al.   MOLECULAR ECOLOGY

Genomic signatures of selection at linked sites: unifying the disparity among species

(2013) Asher D. Cutter et al.   NATURE REVIEWS GENETICS

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Reinforcement in plants

(2013) Robin Hopkins   NEW PHYTOLOGIST

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Reinforcement of male mate preferences in sympatric killifish species Lucania goodei and Lucania parva

(2012) Olivia Gregorio et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets

(2012) N. Alachiotis et al.   BIOINFORMATICS

Pollinator-Mediated Selection on Flower Color Allele Drives Reinforcement

(2012) R. Hopkins et al.   SCIENCE

Population Genomics of Inversion Polymorphisms in Drosophila melanogaster

(2012) Russell B. Corbett-Detig et al.   PLoS Genetics

MOLECULAR SIGNATURES OF SELECTION ON REPRODUCTIVE CHARACTER DISPLACEMENT OF FLOWER COLOR IN PHLOX DRUMMONDII

(2011) Robin Hopkins et al.   EVOLUTION

Reinforcement selection acting on the European house mouse hybrid zone

(2011) BARBORA VOŠLAJEROVÁ BÍMOVÁ et al.   MOLECULAR ECOLOGY

Identification of two genes causing reinforcement in the Texas wildflower Phlox drummondii

(2011) Robin Hopkins et al.   NATURE

Coalescent patterns for chromosomal inversions in divergent populations

(2011) R. F. Guerrero et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic impacts of chromosomal inversions in parapatric Drosophila species

(2011) S. E. McGaugh et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Speciation Has a Spatial Scale That Depends on Levels of Gene Flow

(2010) Yael Kisel et al.   AMERICAN NATURALIST

Speciation via species interactions: the divergence of mating traits within species

(2010) Conrad J. Hoskin et al.   ECOLOGY LETTERS

REINFORCEMENT IN CHORUS FROGS: LIFETIME FITNESS ESTIMATES INCLUDING INTRINSIC NATURAL SELECTION AND SEXUAL SELECTION AGAINST HYBRIDS

(2010) Emily Moriarty Lemmon et al.   EVOLUTION

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Population genetic inference from genomic sequence variation

(2010) J. E. Pool et al.   GENOME RESEARCH

Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina

(2010) BÉNÉDICTE N. PONCET et al.   MOLECULAR ECOLOGY

Assessing population structure: FST and related measures

(2010) PATRICK G. MEIRMANS et al.   Molecular Ecology Resources

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

(2009) Joe Hereford   AMERICAN NATURALIST

The Genetics and Ecology of Reinforcement

(2009) Daniel Ortiz-Barrientos et al.   Annals of the New York Academy of Sciences

DIVERSIFICATION OF CONSPECIFIC SIGNALS IN SYMPATRY: GEOGRAPHIC OVERLAP DRIVES MULTIDIMENSIONAL REPRODUCTIVE CHARACTER DISPLACEMENT IN FROGS

(2009) Emily Moriarty Lemmon   EVOLUTION

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species

(2009) M A F Noor et al.   HEREDITY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

Genome-wide scans for footprints of natural selection

(2009) T. K. Oleksyk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Character Displacement: Ecological And Reproductive Responses To A Common Evolutionary Problem

(2009) Karin S. Pfennig et al.   QUARTERLY REVIEW OF BIOLOGY

The Genomics of Speciation in Drosophila: Diversity, Divergence, and Introgression Estimated Using Low-Coverage Genome Sequencing

(2009) Rob J. Kulathinal et al.   PLoS Genetics

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

NATURAL SELECTION REINFORCES SPECIATION IN A RADIATION OF NEOTROPICAL RAINFOREST PLANTS

(2008) Kathleen M. Kay et al.   EVOLUTION

EVIDENCE OF REINFORCEMENT OF PREMATING ISOLATION BETWEEN TWO SPECIES OF THE GENUS OCHTHEBIUS (COLEOPTERA: HYDRAENIDAE)

(2008) Sandra Urbanelli et al.   EVOLUTION

Linkage Disequilibrium Under Genetic Hitchhiking in Finite Populations

(2008) P. Pfaffelhuber et al.   GENETICS

The role of linkage disequilibrium in the evolution of premating isolation

(2008) M R Servedio   HEREDITY