Terminal-Repeat Retrotransposons with GAG Domain in Plant Genomes: A New Testimony on the Complex World of Transposable Elements

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Six species of Psilanthus transferred to Coffea (Coffeeae, Rubiaceae)

(2014) A. P. Davis   Phytotaxa

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

(2013) J. Collen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites

(2012) Norosoa J. Razafinarivo et al.   ANNALS OF BOTANY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Geographical gradients in the genome size variation of wild coffee trees (Coffea) native to Africa and Indian Ocean islands

(2012) Norosoa J. Razafinarivo et al.   Tree Genetics & Genomes

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Considering Transposable Element Diversification in De Novo Annotation Approaches

(2011) Timothée Flutre et al.   PLoS One

The Ectocarpus genome sequence: insights into brown algal biology and the evolutionary diversity of the eukaryotes

(2010) J. Mark Cock et al.   NEW PHYTOLOGIST

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae

(2009) Anne Roulin et al.   BMC EVOLUTIONARY BIOLOGY

Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes

(2009) Romain Guyot et al.   BMC PLANT BIOLOGY

Time Tree of Rubiaceae: Phylogeny and Dating the Family, Subfamilies, and Tribes

(2009) Birgitta Bremer et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley

(2009) Thomas Wicker et al.   PLANT JOURNAL

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Cassandra retrotransposons carry independently transcribed 5S RNA

(2008) R. Kalendar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA