MU-LOC: A Machine-Learning Method for Predicting Mitochondrially Localized Proteins in Plants

The proteome of higher plant mitochondria

(2017) R.S.P. Rao et al.   MITOCHONDRION

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell

(2017) Jana Sperschneider et al.   Scientific Reports

Deep learning for computational biology

(2016) Christof Angermueller et al.   Molecular Systems Biology

SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations

(2016) Cornelia M. Hooper et al.   NUCLEIC ACIDS RESEARCH

What is hot in plant mitochondria?

(2016) Ian Max Møller   PHYSIOLOGIA PLANTARUM

TensorFlow: Biology’s Gateway to Deep Learning?

(2016) Ladislav Rampasek et al.   Cell Systems

MitoFates: Improved Prediction of Mitochondrial Targeting Sequences and Their Cleavage Sites

(2015) Yoshinori Fukasawa et al.   MOLECULAR & CELLULAR PROTEOMICS

Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL)

(2015) Cornelia M. Hooper et al.   PLANT AND CELL PHYSIOLOGY

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression

(2015) Yuichi Aoki et al.   PLANT AND CELL PHYSIOLOGY

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

(2014) Cornelia M. Hooper et al.   BIOINFORMATICS

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Coordination of plant mitochondrial biogenesis: keeping pace with cellular requirements

(2014) Elina Welchen et al.   Frontiers in Plant Science

GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology

(2013) Živa Ramšak et al.   NUCLEIC ACIDS RESEARCH

The Potato Tuber Mitochondrial Proteome

(2013) F. Salvato et al.   PLANT PHYSIOLOGY

A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts

(2012) Christopher Carrie et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Components of Mitochondrial Oxidative Phosphorylation Vary in Abundance Following Exposure to Cold and Chemical Stresses

(2012) Yew-Foon Tan et al.   JOURNAL OF PROTEOME RESEARCH

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

(2012) Sandra K. Tanz et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Organization and Regulation of Mitochondrial Respiration in Plants

(2011) A. Harvey Millar et al.   Annual Review of Plant Biology

Role of peroxisomes in ROS/RNS-metabolism: Implications for human disease

(2011) Marc Fransen et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

pROC: an open-source package for R and S+ to analyze and compare ROC curves

(2011) Xavier Robin et al.   BMC BIOINFORMATICS

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Multiple Lines of Evidence Localize Signaling, Morphology, and Lipid Biosynthesis Machinery to the Mitochondrial Outer Membrane of Arabidopsis

(2011) O. Duncan et al.   PLANT PHYSIOLOGY

Integrative Identification of Arabidopsis Mitochondrial Proteome and Its Function Exploitation through Protein Interaction Network

(2011) Jian Cui et al.   PLoS One

The Mitochondrial Proteome and Human Disease

(2010) Sarah E. Calvo et al.   Annual Review of Genomics and Human Genetics

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Genome-wide functional annotation by integrating multiple microarray datasets using meta-analysis

(2010) Gyan Prakash Srivastava et al.   International Journal of Data Mining and Bioinformatics

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS

Mitochondrial protein import: from proteomics to functional mechanisms

(2010) Oliver Schmidt et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

YLoc—an interpretable web server for predicting subcellular localization

(2010) Sebastian Briesemeister et al.   NUCLEIC ACIDS RESEARCH

Importing Mitochondrial Proteins: Machineries and Mechanisms

(2009) Agnieszka Chacinska et al.   CELL

Protein transport in organelles: Dual targeting of proteins to mitochondria and chloroplasts

(2009) Chris Carrie et al.   FEBS Journal

PPDB, the Plant Proteomics Database at Cornell

(2008) Qi Sun et al.   NUCLEIC ACIDS RESEARCH

Experimental Analysis of the Rice Mitochondrial Proteome, Its Biogenesis, and Heterogeneity

(2008) S. Huang et al.   PLANT PHYSIOLOGY