Prediction of Cacao (Theobroma cacao) Resistance to Moniliophthora spp. Diseases via Genome-Wide Association Analysis and Genomic Selection

Enhancing genomic prediction with genome-wide association studies in multiparental maize populations

(2017) Y Bian et al.   HEREDITY

Application of Genome Wide Association and Genomic Prediction for Improvement of Cacao Productivity and Resistance to Black and Frosty Pod Diseases

(2017) J. Alberto Romero Navarro et al.   Frontiers in Plant Science

A Larger Chocolate Chip—Development of a 15K Theobroma cacao L. SNP Array to Create High-Density Linkage Maps

(2017) Donald Livingstone et al.   Frontiers in Plant Science

Genetic diversity and association mapping in the Colombian Central Collection of Solanum tuberosum L. Andigenum group using SNPs markers

(2017) Jhon Berdugo-Cely et al.   PLoS One

Identification of candidate genes involved in Witches’ broom disease resistance in a segregating mapping population of Theobroma cacao L. in Brazil

(2016) Stefan Royaert et al.   BMC GENOMICS

Theobroma cacao L. pathogenesis-related gene tandem array members show diverse expression dynamics in response to pathogen colonization

(2016) Andrew S. Fister et al.   BMC GENOMICS

GenoMatrix: A Software Package for Pedigree-Based and Genomic Prediction Analyses on Complex Traits

(2016) Alireza Nazarian et al.   JOURNAL OF HEREDITY

Association mapping of seed and disease resistance traits in Theobroma cacao L.

(2016) Lambert A. Motilal et al.   PLANTA

Genome to Phenome Mapping in Apple Using Historical Data

(2016) Zoë Migicovsky et al.   Plant Genome

Assessing microsatellite linkage disequilibrium in wild, cultivated, and mapping populations of Theobroma cacao L. and its impact on association mapping

(2015) J. Conrad Stack et al.   Tree Genetics & Genomes

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

(2015) Daniel Money et al.   G3-Genes Genomes Genetics

Genomics: A potential panacea for the perennial problem

(2014) Kendra A. McClure et al.   AMERICAN JOURNAL OF BOTANY

Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases

(2014) Lyndel W Meinhardt et al.   BMC GENOMICS

Improving the Accuracy of Whole Genome Prediction for Complex Traits Using the Results of Genome Wide Association Studies

(2014) Zhe Zhang et al.   PLoS One

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

Of mushrooms and chocolate trees: aetiology and phylogeny of witches' broom and frosty pod diseases of cacao

(2012) H. C. Evans et al.   PLANT PATHOLOGY

Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population

(2011) Kristen L Kump et al.   NATURE GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

(2010) J. Cockram et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Across-line SNP association study of innate and adaptive immune response in laying hens

(2009) F. Biscarini et al.   ANIMAL GENETICS

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Increased accuracy of artificial selection by using the realized relationship matrix

(2009) B. J. HAYES et al.   Genetics Research

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

A meta–QTL analysis of disease resistance traits of Theobroma cacao L.

(2009) C. Lanaud et al.   MOLECULAR BREEDING

Array-based high-throughput DNA markers for crop improvement

(2008) P K Gupta et al.   HEREDITY

Moniliophthora perniciosa, the causal agent of witches’ broom disease of cacao: what's new from this old foe?

(2008) LYNDEL W. MEINHARDT et al.   MOLECULAR PLANT PATHOLOGY

Geographic and Genetic Population Differentiation of the Amazonian Chocolate Tree (Theobroma cacao L)

(2008) Juan C. Motamayor et al.   PLoS One