Genetic diversity and association mapping in the Colombian Central Collection of Solanum tuberosum L. Andigenum group using SNPs markers
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Title
Genetic diversity and association mapping in the Colombian Central Collection of Solanum tuberosum L. Andigenum group using SNPs markers
Authors
Keywords
Potato, Population genetics, Tubers, Plant breeding, Species diversity, Gene mapping, Flowers, Tetraploidy
Journal
PLoS One
Volume 12, Issue 3, Pages e0173039
Publisher
Public Library of Science (PLoS)
Online
2017-03-04
DOI
10.1371/journal.pone.0173039
References
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Related references
Note: Only part of the references are listed.- Evaluation of LD decay and various LD-decay estimators in simulated and SNP-array data of tetraploid potato
- (2016) Peter G. Vos et al. THEORETICAL AND APPLIED GENETICS
- Genetic mapping with an inbred line-derived F2 population in potato
- (2016) Jeffrey B. Endelman et al. THEORETICAL AND APPLIED GENETICS
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- How do we address the disconnect between genetic and morphological diversity in germplasm collections?
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- (2015) Deepmala Sehgal et al. PLoS One
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- (2015) Peter G. Vos et al. THEORETICAL AND APPLIED GENETICS
- Genetic Linkage Mapping of Economically Important Traits in Cultivated Tetraploid Potato ( Solanum tuberosum L.)
- (2015) Alicia N. Massa et al. G3-Genes Genomes Genetics
- Assessment of genetic diversity among faba bean genotypes using agro-morphological and molecular markers
- (2015) Megahed H. Ammar et al. SAUDI JOURNAL OF BIOLOGICAL SCIENCES
- An association mapping approach to identify favourable alleles for tomato fruit quality breeding
- (2014) Valentino Ruggieri et al. BMC PLANT BIOLOGY
- Assessment of genetic diversity among Indian potato (Solanum tuberosum L.) collection using microsatellite and retrotransposon based marker systems
- (2014) Vishakha Sharma et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phenotypic Stability and Genome-Wide Association Study of Late Blight Resistance in Potato Genotypes Adapted to the Tropical Highlands
- (2014) Hannele Lindqvist-Kreuze et al. PHYTOPATHOLOGY
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- (2014) Yunlei Zhao et al. PLoS One
- Separating the wheat from the chaff – a strategy to utilize plant genetic resources from ex situ genebanks
- (2014) Jens Keilwagen et al. Scientific Reports
- AFLP markers for the assessment of genetic diversity in european and North American potato varieties cultivated in Iran
- (2014) S.T. Esfahani et al. Crop Breeding and Applied Biotechnology
- Genetic diversity among native varieties and commercial cultivars of Solanum tuberosum ssp. tuberosum L. present in Chile
- (2013) Jaime Solano et al. ELECTRONIC JOURNAL OF BIOTECHNOLOGY
- StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations
- (2013) Luke W. Pembleton et al. Molecular Ecology Resources
- A High-Density SNP Genotyping Array for Rice Biology and Molecular Breeding
- (2013) Haodong Chen et al. Molecular Plant
- Population structure and linkage disequilibrium in diploid and tetraploid potato revealed by genome-wide high-density genotyping using the SolCAP SNP array
- (2013) Benjamin Stich et al. PLANT BREEDING
- Genetic diversity among potato species as revealed by phenotypic resistances and SSR markers
- (2013) D. Carputo et al. Plant Genetic Resources-Characterization and Utilization
- Linkage Analysis and QTL Mapping Using SNP Dosage Data in a Tetraploid Potato Mapping Population
- (2013) Christine A. Hackett et al. PLoS One
- Genetic diversity and linkage disequilibrium analysis in elite sugar beet breeding lines and wild beet accessions
- (2013) Ibraheem Adetunji et al. THEORETICAL AND APPLIED GENETICS
- Population structure, genetic diversity and linkage disequilibrium in elite winter wheat assessed with SNP and SSR markers
- (2013) Tobias Würschum et al. THEORETICAL AND APPLIED GENETICS
- Construction of Reference Chromosome-Scale Pseudomolecules for Potato: Integrating the Potato Genome with Genetic and Physical Maps
- (2013) Sanjeev Kumar Sharma et al. G3-Genes Genomes Genetics
- Retrospective View of North American Potato ( Solanum tuberosum L.) Breeding in the 20 th and 21 st Centuries
- (2013) Candice N. Hirsch et al. G3-Genes Genomes Genetics
- GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update
- (2012) R. Peakall et al. BIOINFORMATICS
- Genome-wide association studies for agronomical traits in a world wide spring barley collection
- (2012) Raj K Pasam et al. BMC PLANT BIOLOGY
- Correlations between Genetic, Morphological, and Chemical Diversities in a Germplasm Collection of the Medicinal PlantOriganum vulgareL.
- (2012) Ali Azizi et al. CHEMISTRY & BIODIVERSITY
- Genetic Diversity of the Endemic and Medicinally Important Plant Rheum officinale as Revealed by Inter-Simpe Sequence Repeat (ISSR) Markers
- (2012) Xu-Mei Wang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
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- (2012) Kimberly J. Felcher et al. PLoS One
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- (2012) Muhammet Sakiroglu et al. THEORETICAL AND APPLIED GENETICS
- adegenet 1.3-1: new tools for the analysis of genome-wide SNP data
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- (2011) Jinquan Li et al. BMC GENOMICS
- Association genetics in Solanum tuberosum provides new insights into potato tuber bruising and enzymatic tissue discoloration
- (2011) Claude Urbany et al. BMC GENOMICS
- Single nucleotide polymorphism discovery in elite north american potato germplasm
- (2011) John P Hamilton et al. BMC GENOMICS
- Construction of an integrated microsatellite and key morphological characteristic database of potato varieties on the EU common catalogue
- (2011) A. Reid et al. EUPHYTICA
- Genome sequence and analysis of the tuber crop potato
- (2011) Xun Xu et al. NATURE
- STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
- (2011) Dent A. Earl et al. Conservation Genetics Resources
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- (2010) S-C Sim et al. HEREDITY
- Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
- (2010) LAURENT EXCOFFIER et al. Molecular Ecology Resources
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- (2009) Wayne L. Morris et al. AMERICAN JOURNAL OF POTATO RESEARCH
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- Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes
- (2008) Laurence J. M. Ducreux et al. JOURNAL OF EXPERIMENTAL BOTANY
- genepop’007: a complete re-implementation of the genepop software for Windows and Linux
- (2007) FRANÇOIS ROUSSET Molecular Ecology Resources
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