Exploiting the Genomic Diversity of Rice (Oryza sativa L.): SNP-Typing in 11 Early-Backcross Introgression-Breeding Populations

High-throughput SNP genotyping of modern and wild emmer wheat for yield and root morphology using a combined association and linkage analysis

(2017) Stuart J. Lucas et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Harnessing the hidden genetic diversity for improving multiple abiotic stress tolerance in rice (Oryza sativa L.)

(2017) Jauhar Ali et al.   PLoS One

A large-scale chromosome-specific SNP discovery guideline

(2016) Bala Ani Akpinar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits

(2015) Huihui Li et al.   BMC GENOMICS

SIFT missense predictions for genomes

(2015) Robert Vaser et al.   Nature Protocols

SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations

(2015) Alexis Dereeper et al.   NUCLEIC ACIDS RESEARCH

Genetic control of morphometric diversity in the maize shoot apical meristem

(2015) Samuel Leiboff et al.   Nature Communications

Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton

(2015) M. Sariful Islam et al.   Plant Genome

Identification and Fine Mapping of a Stably Expressed QTL for Cold Tolerance at the Booting Stage Using an Interconnected Breeding Population in Rice

(2015) Yajun Zhu et al.   PLoS One

Genome-wide DNA polymorphisms in low Phosphate tolerant and sensitive rice genotypes

(2015) Poonam Mehra et al.   Scientific Reports

J-Circos: an interactive Circos plotter

(2014) Jiyuan An et al.   BIOINFORMATICS

Deep re-sequencing of a widely used maintainer line of hybrid rice for discovery of DNA polymorphisms and evaluation of genetic diversity

(2014) Yuanyi Hu et al.   MOLECULAR GENETICS AND GENOMICS

Genome sequence of the cultivated cotton Gossypium arboreum

(2014) Fuguang Li et al.   NATURE GENETICS

The 3,000 rice genomes project

(2014)   GigaScience

Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance

(2013) Mukesh Jain et al.   PLANT BIOTECHNOLOGY JOURNAL

Associative transcriptomics of traits in the polyploid crop species Brassica napus

(2012) Andrea L Harper et al.   NATURE BIOTECHNOLOGY

2b-RAD: a simple and flexible method for genome-wide genotyping

(2012) Shi Wang et al.   NATURE METHODS

Genome-wide DNA polymorphisms in eliteindicarice inbreds discovered by whole-genome sequencing

(2012) Gopala K. Subbaiyan et al.   PLANT BIOTECHNOLOGY JOURNAL

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Genotyping-by-Sequencing for Plant Breeding and Genetics

(2012) Jesse A. Poland et al.   Plant Genome

Distinguishing between Selective Sweeps from Standing Variation and from a De Novo Mutation

(2012) Benjamin M. Peter et al.   PLoS Genetics

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Discovery of Genome-Wide DNA Polymorphisms in a Landrace Cultivar of Japonica Rice by Whole-Genome Sequencing

(2011) Yuko Arai-Kichise et al.   PLANT AND CELL PHYSIOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS