A large-scale chromosome-specific SNP discovery guideline

Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii

(2016) Bala A. Akpinar et al.   Frontiers in Plant Science

Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes

(2015) Ajay Kumar et al.   BMC GENOMICS

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements

(2015) Bala Ani Akpinar et al.   BMC GENOMICS

Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress

(2015) Bala Ani Akpinar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Harnessing NGS and Big Data Optimally: Comparison of miRNA Prediction from Assembled versus Non-assembled Sequencing Data—The Case of the GrassAegilops tauschiiComplex Genome

(2015) Hikmet Budak et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool

(2015) Mark O. Winfield et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of theVERNALIZATION 4gene reveals the origin of spring growth habit in ancient wheats from South Asia

(2015) Nestor Kippes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide association study of phosphorus-deficiency-tolerance traits in Aegilops tauschii

(2015) Yaxi Liu et al.   THEORETICAL AND APPLIED GENETICS

Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides

(2015) Bala Ani Akpinar et al.   Scientific Reports

Genome-wide association study of 29 morphological traits in Aegilops tauschii

(2015) Yaxi Liu et al.   Scientific Reports

From Genetics to Functional Genomics: Improvement in Drought Signaling and Tolerance in Wheat

(2015) Hikmet Budak et al.   Frontiers in Plant Science

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

(2014) Stuart J Lucas et al.   BMC GENOMICS

Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat

(2014) Lindsey J Leach et al.   BMC GENOMICS

Sequencing chromosome 5D ofAegilops tauschiiand comparison with its allopolyploid descendant bread wheat (Triticum aestivum)

(2014) Bala A. Akpinar et al.   PLANT BIOTECHNOLOGY JOURNAL

mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat

(2014) A. Li et al.   PLANT CELL

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Genetic and physical mapping of powdery mildew resistance gene MlHLT in Chinese wheat landrace Hulutou

(2014) Zhenzhong Wang et al.   THEORETICAL AND APPLIED GENETICS

Association of microsatellite loci alleles of the group-5 of chromosomes and the frost resistance of winter wheat

(2013) M. V. Galaeva et al.   Cytology and Genetics

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

(2013) Jizeng Jia et al.   NATURE

Aegilops tauschiisingle nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat

(2013) Jirui Wang et al.   NEW PHYTOLOGIST

Unlocking Triticeae genomics to sustainably feed the future

(2013) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI–MS/MS

(2013) Hikmet Budak et al.   PLANT MOLECULAR BIOLOGY

Unique and Conserved MicroRNAs in Wheat Chromosome 5D Revealed by Next-Generation Sequencing

(2013) Kuaybe Yucebilgili Kurtoglu et al.   PLoS One

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

(2013) M.-C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drought Tolerance in Modern and Wild Wheat

(2013) Hikmet Budak et al.   TheScientificWorldJOURNAL

Next-generation sequencing applications for wheat crop improvement

(2012) Paul J. Berkman et al.   AMERICAN JOURNAL OF BOTANY

Discovery of High-Confidence Single Nucleotide Polymorphisms from Large-Scale De Novo Analysis of Leaf Transcripts of Aegilops tauschii, A Wild Wheat Progenitor

(2012) J. C. M. Iehisa et al.   DNA RESEARCH

SKP1-like-related genes interact with various F-box proteins and may form SCF complexes with Cullin–F-box proteins in wheat

(2012) Min Jeong Hong et al.   MOLECULAR BIOLOGY REPORTS

Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response

(2012) Duygu Kuzuoglu-Ozturk et al.   PLANTA

A single nucleotide polymorphism at the Vrn-D1 promoter region in common wheat is associated with vernalization response

(2012) Jing Zhang et al.   THEORETICAL AND APPLIED GENETICS

Sequence-based marker development in wheat: Advances and applications to breeding

(2011) Etienne Paux et al.   BIOTECHNOLOGY ADVANCES

A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening

(2011) Frank M You et al.   BMC GENOMICS

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

(2011) Eduard D Akhunov et al.   BMC GENOMICS

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

(2011) Frank M You et al.   BMC GENOMICS

Functional features of a single chromosome arm in wheat (1AL) determined from its structure

(2011) Stuart J. Lucas et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

TMPIT1 from wild emmer wheat: First characterisation of a stress-inducible integral membrane protein

(2011) Stuart Lucas et al.   GENE

The drought response displayed by a DRE-binding protein from Triticum dicoccoides

(2011) Stuart Lucas et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genetic structure and ecogeographical adaptation in wild barley (Hordeum chilense Roemer et Schultes) as revealed by microsatellite markers

(2010) Almudena Castillo et al.   BMC PLANT BIOLOGY

The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization

(2010) Patrick PC Tam et al.   BMC PLANT BIOLOGY

Population structure of wild wheat D-genome progenitorAegilops tauschiiCoss.: implications for intraspecific lineage diversification and evolution of common wheat

(2010) NOBUYUKI MIZUNO et al.   MOLECULAR ECOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Drought and salt tolerances in wild relatives for wheat and barley improvement

(2009) EVIATAR NEVO et al.   PLANT CELL AND ENVIRONMENT

Characterization ofWAP2gene inAegilops tauschiiand comparison with homoeologous loci in wheat

(2009) Shun-Zong NING et al.   Journal of Systematics and Evolution